YRC Public Data Repository - Protein Structure Prediction

Protein:	Obp58c-PA
Organism:	Drosophila melanogaster
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Obp58c-PA.

Description	E-value	Query Range	Subject Range
Obp58b-PA - The gene Odorant-binding protein 58b is referred to in FlyBase by the symbol Dmel\Obp58b (CG13518, F...	193.0	[0..3]	[199..2]
gi\|54635668, gi\|... - gi\|54635668\|gb\|EAL25071.1\| GA12342 [Drosophila pseudoobscura pseudoobscura], gi\|125807712\|ref\|XP_001... gi\|125807712\|ref... - GA12342-PA [Drosophila pseudoobscura], GA12342 [Drosophila pseudoobscura pseudoobscura]	182.0	[0..1]	[199..1]
gi\|33355873, gi\|... - gi\|40019409\|emb\|CAF01998.1\| putative odorant-binding protein OBP3788 [Anopheles gambiae], gi\|3335587... gi\|55245600, gi\|... - gi\|58378570\|ref\|XP_308533.2\| AGAP007286-PA [Anopheles gambiae str. PEST], gi\|55245600\|gb\|EAA04333.2\|...	155.0	[0..5]	[192..11]
gi\|22506871 - gi\|22506871\|gb\|AAM97673.1\| odorant binding protein-8 [Anopheles gambiae]	153.0	[0..5]	[192..11]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCTILLSFF SLIWFAGGIK IDCENTEAIN EDHIHYCCKH PDGHNDLIEG CARETNFTLP  60
   61 NQNEEALVDI TADRAIRGTC FGKCVFSKLN LMKDNNLDMD AVRSLFTERF PDDPEYAKEM 120
  121 INAFDHCHGK SEENTSMFLS KPLFKQMSKQ FCDPKSSVVL ACVIRQFFHN CPADRWSKTK 180
  181 ECEDTLAFSK KCQDSLATL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1frfS
Description:	Nickel-iron hydrogenase, small subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.395472885869348	bayes_pls_golite062009
protein binding	0.0805028060539605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: