YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311782, CG3...
Organism:	Drosophila melanogaster
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311782, CG3....

Description	E-value	Query Range	Subject Range
gi\|21645464, gi\|... - gi\|24657430\|ref\|NP_726137.1\| CG30401-PB, isoform B [Drosophila melanogaster], gi\|21645464\|gb\|AAM7102...	486.0	[0..1]	[275..103]
gi\|54636867, gi\|... - gi\|54636867\|gb\|EAL26270.1\| GA15819-PA [Drosophila pseudoobscura], gi\|125810961\|ref\|XP_001361691.1\| G...	194.0	[0..1]	[229..1]
gi\|118782417, gi... - gi\|118782417\|ref\|XP_001237452.1\| ENSANGP00000031434 [Anopheles gambiae str. PEST], gi\|116129559\|gb\|E...	92.0	[0..8]	[57..8]
gi\|108869778, gi... - gi\|157137167\|ref\|XP_001663918.1\| Psq-DNA binding domain protein, putative [Aedes aegypti], gi\|108869...	91.0	[0..8]	[57..8]
gi\|91093983 - gi\|91093983\|ref\|XP_969154.1\| PREDICTED: similar to conserved hypothetical protein [Tribolium castane...	84.0	[0..10]	[129..443]
gi\|17429288, gi\|... - gi\|17431017\|emb\|CAD17698.1\| isrso8-transposase orfa protein [Ralstonia solanacearum GMI1000], gi\|174... gi\|17548768, gi\|... - gi\|17548768\|ref\|NP_522108.1\| ISRSO8-transposase orfA protein [Ralstonia solanacearum GMI1000], gi\|17...	83.0	[0..10]	[56..3]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERFGIPRGK RPRVQVSLDD KERAIARIRG GETKAGISRE LGVPESTVRG WVKRAEQRLA  60
   61 RETTSQTGSA NYSTILAMTL AKPQVTISTK SSASSVISKS SYSSPPLDLK P

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.15
Match:	2jn6A
Description:	No description for 2jn6A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.232528774113254	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [112-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKQPQKRNIN GHPVTCTQDP VEDSAATSIP IPVPIPVPLP VPPMVSPDSE QQMSAWLHIF  60
   61 NAGILNFTLI ASAAVLQARS RGLADRLPLW QIITDFVDEA ERNVNANGGW YLEGQPATGH 120
  121 MSARQRPVRV PTKVHSYRRN LKAPPAHITA EDDEDSYTDA DVPH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.01
Match:	1c0mA
Description:	DNA-binding domain of retroviral integrase; Retroviral integrase, catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: