YRC Public Data Repository - Protein Structure Prediction

Protein:	HmgD-PC, HmgD-PB...
Organism:	Drosophila melanogaster
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HmgD-PC, HmgD-PB....

Description	E-value	Query Range	Subject Range
gi\|73990608 - gi\|73990608\|ref\|XP_542802.2\| PREDICTED: similar to SRY-box 14 [Canis familiaris]	116.0	[0..2]	[86..343]
gi\|220945316, gi... - gi\|220952556\|gb\|ACL88821.1\| Sox21b-PA [synthetic construct], gi\|220945316\|gb\|ACL85201.1\| Sox21b-PA [... Sox21b-PA, FBpp0... - The gene Sox21b is referred to in FlyBase by the symbol Dmel\Sox21b (CG32139, FBgn0042630). It is a ...	113.0	[0..4]	[83..247]
gi\|224060771 - gi\|224060771\|ref\|XP_002196639.1\| PREDICTED: SRY (sex determining region Y)-box 2 [Taeniopygia guttat... SOX2_CHICK - Transcription factor SOX-2 OS=Gallus gallus GN=SOX2 PE=1 SV=1	112.0	[0..2]	[98..36]
gi\|74315425, gi\|... - gi\|74315425\|gb\|ABA02363.1\| sox family protein B1 [Nematostella vectensis], gi\|156383753\|ref\|XP_00163...	112.0	[0..3]	[85..31]
gi\|82930937, gi\|... - gi\|94387526\|ref\|XP_997909.1\| PREDICTED: similar to Transcription factor SOX-14 [Mus musculus], gi\|82...	112.0	[0..2]	[86..189]
gi\|33415924 - gi\|33415924\|gb\|AAQ18499.1\| transcription factor Sox14b [Takifugu rubripes]	112.0	[0..3]	[86..6]
gi\|108871822, gi... - gi\|157130629\|ref\|XP_001655745.1\| hypothetical protein AaeL_AAEL011831 [Aedes aegypti], gi\|108871822\|...	111.0	[0..2]	[81..133]

Back

Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKPKRPLS AYMLWLNSAR ESIKRENPGI KVTEVAKRGG ELWRAMKDKS EWEAKAAKAK  60
   61 DDYDRAVKEF EANGGSSAAN GGGAKKRAKP AKKVAKKSKK EESDEDDDDE SE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	1e7jA
Description:	HMG-D
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.927928103499335	bayes_pls_golite062009
nucleic acid binding	0.38664561645052	bayes_pls_golite062009
DNA binding	0.37554038880732	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: