YRC Public Data Repository - Protein Structure Prediction

Protein:	Tim10-PB, Tim10-PA
Organism:	Drosophila melanogaster
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tim10-PB, Tim10-PA.

Description	E-value	Query Range	Subject Range
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	111.0	[0..2]	[90..117]
gi\|5107172 - gi\|5107172\|gb\|AAD39998.1\|AF150092_1 small zinc finger-like protein [Drosophila melanogaster]	105.0	[0..1]	[92..1]
gi\|87248623, gi\|... - gi\|87248623\|gb\|ABD36364.1\| mitochondrial intermembrane space translocase subunit Tim10 [Bombyx mori]...	103.0	[0..1]	[89..1]
AGAP010679-PA - TIM10: mitochrondrial inner membrane translocase subunit TIM10\|protein_coding\|3L:8341276:8341637:1\|g... gi\|58381664, gi\|... - gi\|58381664\|ref\|XP_311395.2\| AGAP010679-PA [Anopheles gambiae str. PEST], gi\|55242884\|gb\|EAA06991.2\|...	100.0	[0..1]	[90..1]
gi\|5107178, gi\|7... - gi\|74096149\|ref\|NP_001027735.1\| small zinc finger-like protein [Ciona intestinalis], gi\|5107178\|gb\|A...	98.0	[0..9]	[91..2]
gi\|114195880, gi... - gi\|115388581\|ref\|XP_001211796.1\| mitochondrial import inner membrane translocase subunit tim10 [Aspe...	97.0	[0..2]	[88..7]
gi\|108873347, gi... - gi\|94468974\|gb\|ABF18336.1\| mitochondrial import inner membrane translocase subunits TIM10/TIM12 [Aed...	97.0	[0..1]	[90..1]
gi\|54635538, gi\|... - gi\|54635538\|gb\|EAL24941.1\| GA22092 [Drosophila pseudoobscura pseudoobscura], gi\|125807337\|ref\|XP_001... gi\|194109680, gi... - gi\|195149780\|ref\|XP_002015833.1\| GL11269 [Drosophila persimilis], gi\|194109680\|gb\|EDW31723.1\| GL1126... gi\|125807337\|ref... - GA22092-PA [Drosophila pseudoobscura], GA22092 [Drosophila pseudoobscura pseudoobscura]	96.0	[0..1]	[92..1]
gi\|47218441 - gi\|47218441\|emb\|CAG03713.1\| unnamed protein product [Tetraodon nigroviridis]	96.0	[0..13]	[91..6]
TIM10_XENTR - Mitochondrial import inner membrane translocase subunit Tim10 OS=Xenopus tropicalis GN=timm10 PE=3 S...	95.0	[0..13]	[90..6]

Back

Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPQISTAD QAKLQLMQEM EIEMMSDLYN RMTNACHKKC IPPRYSESEL GKGEMVCIDR  60
   61 CVAKYLDIHE KIGKKLTAMS MQDEELMKKM SS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits