YRC Public Data Repository - Protein Structure Prediction

Protein:	pirk-PA, FBpp0311731
Organism:	Drosophila melanogaster
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pirk-PA, FBpp0311731.

Description	E-value	Query Range	Subject Range
gi\|54635546, gi\|... - gi\|54635546\|gb\|EAL24949.1\| GA13889 [Drosophila pseudoobscura pseudoobscura], gi\|125807353\|ref\|XP_001... gi\|194109691, gi... - gi\|195149802\|ref\|XP_002015844.1\| GL11274 [Drosophila persimilis], gi\|194109691\|gb\|EDW31734.1\| GL1127... gi\|125807353\|ref... - GA13889-PA [Drosophila pseudoobscura], GA13889 [Drosophila pseudoobscura pseudoobscura]	238.0	[0..1]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVRVIETDS ASDSYDDDEC STCQKEHEQG KSPNKSKKSS TPPETTIYAS KDLVGNCKEY  60
   61 RIENNTRDLR IIGNGNRIRI VNNSGQLQVI GNSTRLKIQN NSGALKYTGN DGRIYLGSSS 120
  121 TQQVVDYTGC NGLLKVVKSL DLSGDAKKRP SSRSKNAKPT PTDAGQGKSG GIEIDSNLTI 180
  181 RHGAGNIVIK NAINVSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits