YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL54-PA
Organism:	Drosophila melanogaster
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL54-PA.

Description	E-value	Query Range	Subject Range
gi\|17863026 - gi\|17863026\|gb\|AAL39990.1\| SD09147p [Drosophila melanogaster]	173.0	[0..1]	[132..1]
MRPL54 - mitochondrial ribosomal protein L54	159.0	[0..24]	[132..32]
gi\|114674655 - gi\|114674655\|ref\|XP_001135765.1\| PREDICTED: mitochondrial ribosomal protein L54 [Pan troglodytes]	156.0	[0..24]	[132..32]
gi\|149034435, gi... - gi\|27717591\|ref\|XP_216854.1\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Rattus norve...	152.0	[0..25]	[132..33]
gi\|54637086, gi\|... - gi\|54637086\|gb\|EAL26489.1\| GA21722 [Drosophila pseudoobscura pseudoobscura], gi\|125811536\|ref\|XP_001... gi\|195170220, gi... - gi\|195170220\|ref\|XP_002025911.1\| GL10146 [Drosophila persimilis], gi\|194110775\|gb\|EDW32818.1\| GL1014... gi\|54637086\|gb\|E... - GA21722-PA [Drosophila pseudoobscura], GA21722 [Drosophila pseudoobscura pseudoobscura]	142.0	[0..1]	[132..1]
RM54_BOVIN - 39S ribosomal protein L54, mitochondrial OS=Bos taurus GN=MRPL54 PE=1 SV=1	142.0	[0..10]	[132..1]
gi\|73987447 - gi\|73987447\|ref\|XP_542170.2\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Canis famili...	139.0	[0..2]	[132..134]
RM54_MOUSE - 39S ribosomal protein L54, mitochondrial OS=Mus musculus GN=Mrpl54 PE=1 SV=1	135.0	[0..48]	[132..51]
gi\|157137317, gi... - gi\|157137317\|ref\|XP_001657017.1\| mitochondrial ribosomal protein, L54, putative [Aedes aegypti], gi\|...	123.0	[0..25]	[132..25]
gi\|94732860 - gi\|94732860\|emb\|CAK11408.1\| novel protein similar to vertebrate mitochondrial ribosomal protein L54 ...	123.0	[0..25]	[131..45]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLTAVFQM ARQRLIAPAI GNWARFYAAK PAAPAGKKKK LGKLGPIMEK KVIPVETDAN  60
   61 KLVNYVCGSN YMKTGEDIKI KPDSEYPDWL WTLNTEGIVP LDELDPNSKQ YWRRLRKLAL 120
  121 RRNNQLSKLK KF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.886057
Match:	PF08561.1
Description:	No description for PF08561.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits