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View Structure Prediction Details

Protein: gi|19922656, gi|...
Organism: Drosophila melanogaster
Length: 537 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19922656, gi|....

Description E-value Query
Range
Subject
Range
gi|50758242 - gi|50758242|ref|XP_415827.1| PREDICTED: similar to myosin 18A isoform a; myosin 18A; myosin containi...
197.0 [0..49] [537..1894]

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Predicted Domain #1
Region A:
Residues: [1-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMFFKFLSG NITDANILTE RQVLEREEMQ RRGEWLSASD RELKLLQIEA ESPGLLNYKQ  60
   61 QDVDALTMSI EAIEDASRDY ATLLEDMMTT KHSITKHLGE VECVTAELQL REKDLIAECQ 120
  121 SKAKQLEELQ QENCRLSAEA KKAFTAPQLP PLFMHQLPLE QYFHKCDSFM QYFTLYVKEN 180
  181 FKIQDYDEFQ SAEEDLGREK AKLEDLERGI QFYALSYIRT KAKVKATQCL IDQLDLGKIH 240
  241 CLSLTDMARE MHDLQLLNDY QLSNTHDTLL NDLTIHIQQH TQRRIELVLY ENTKLKLERA 300
  301 VRRHESDKKL TKIISDALSN AELLWIAIQL DCDKKRNCLD TSEELRDQAQ ATWQRIQTMR 360
  361 SINASYQGIC AQFVQEIANL LSAHLGQNIK ATEAKACLFE YEKFGRLLSY SFQSMLNRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [420-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCAAVQDQLA ELKRLEQTLR PFVYDSPLEQ PMFENVRYLS AIYNVTQQQT RLDESGRSLR  60
   61 KDFLENVVGR IERDKLYRYS VVLWIWFLTE PQRMMHAIDE VKKAAAAVIR PGGGLHRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle