YRC Public Data Repository - Protein Structure Prediction

Protein:	maf-S-PA
Organism:	Drosophila melanogaster
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for maf-S-PA.

Description	E-value	Query Range	Subject Range
gi\|38197370, gi\|... - gi\|40254775\|ref\|NP_068608.2\| jun B proto-oncogene [Rattus norvegicus], gi\|38197370\|gb\|AAH61862.1\| Ju...	101.0	[0..2]	[126..216]
gi\|74192653 - gi\|74192653\|dbj\|BAE34851.1\| unnamed protein product [Mus musculus]	101.0	[0..2]	[126..216]
gi\|209628 - gb\|AAA42377.1\| AS42-specific fusion protein gi\|209628 - gi\|209628\|gb\|AAA42377.1\| AS42-specific fusion protein	101.0	[0..20]	[127..524]
gi\|61368351 - gi\|61368351\|gb\|AAX43160.1\| jun B proto-oncogene [synthetic construct]	98.0	[0..2]	[126..219]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKRERKSS LAPLSPCPIP DITDDDLVSI SVRDLNRTLK MRGLNREEIV RMKQRRRTLK  60
   61 NRGYAASCRI KRIEQKDELE TKKSYEWTEL EQMHEDNEQV RREVSNWKNK YKALLQFAIQ 120
  121 NEIPIPSELE GC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits