YRC Public Data Repository - Protein Structure Prediction

Protein:	CG13426-PA
Organism:	Drosophila melanogaster
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG13426-PA.

Description	E-value	Query Range	Subject Range
gi\|37654254 - gi\|37654254\|gb\|AAQ96232.1\| LRRGT00019 [Rattus norvegicus]	156.0	[0..2]	[103..97]
gi\|68051559 - gi\|68051559\|gb\|AAY85043.1\| IP05558p [Drosophila melanogaster]	144.0	[0..1]	[105..20]
gi\|268607536\|ref... - Sec61 gamma subunit [Danio rerio], Uncharacterized protein OS=Danio rerio GN=sec61g PE=3 SV=1 SC61G_MOUSE - Protein transport protein Sec61 subunit gamma OS=Mus musculus GN=Sec61g PE=3 SV=1 gi\|197246400, gi... - gi\|203097935\|ref\|NP_001128492.1\| SEC61, gamma subunit [Rattus norvegicus], gi\|197246400\|gb\|AAI68779.... gi\|149704862 - gi\|149704862\|ref\|XP_001498730.1\| PREDICTED: similar to SEC61 gamma [Equus caballus] gi\|542156480\|ref... - PREDICTED: protein transport protein Sec61 subunit gamma isoform X2 [Zonotrichia albicollis], PREDIC... SEC61G - Sec61 gamma subunit gi\|118086257 - gi\|118086257\|ref\|XP_001236152.1\| PREDICTED: similar to SEC61 gamma [Gallus gallus] gi\|114613545 - gi\|114613545\|ref\|XP_001152525.1\| PREDICTED: similar to SEC61 gamma [Pan troglodytes] gi\|117645636 - gi\|117645636\|emb\|CAL38284.1\| hypothetical protein [synthetic construct] CCDS5513.1_1 - null gi\|109066539 - gi\|109066539\|ref\|XP_001107920.1\| PREDICTED: similar to Protein transport protein SEC61 gamma subunit... HGNC:18277\|MIM:6... - gamma subunit tr\|G3HEF5\|G3HEF5... - Protein transport protein Sec61 subunit gamma OS=Cricetulus griseus GN=I79_008939 PE=3 SV=1 SC61G_BOVIN - Protein transport protein Sec61 subunit gamma OS=Bos taurus GN=SEC61G PE=3 SV=1 SC61G_CANLF - Protein transport protein Sec61 subunit gamma OS=Canis lupus familiaris GN=SEC61G PE=1 SV=1 gi\|221220970 - gi\|221220970\|gb\|ACM09146.1\| transport protein Sec61 subunit gamma [Salmo salar] ENSOCUP00000018881 - pep:novel chromosome:oryCun2:10:45982069:45988756:1 gene:ENSOCUG00000011065 transcript:ENSOCUT000000...	125.0	[0..39]	[104..1]
SC61G_HARAN - Protein transport protein Sec61 subunit gamma OS=Harpagifer antarcticus GN=sec61g PE=3 SV=1	124.0	[0..39]	[104..1]
SC61G_XENLA - Protein transport protein Sec61 subunit gamma OS=Xenopus laevis GN=sec61g PE=3 SV=1	124.0	[0..39]	[104..1]
SC61G_GADMO - Protein transport protein Sec61 subunit gamma OS=Gadus morhua GN=sec61g PE=3 SV=1	123.0	[0..39]	[104..1]
gi\|47207489, gi\|... - gi\|47223467\|emb\|CAF97954.1\| unnamed protein product [Tetraodon nigroviridis], gi\|47207489\|emb\|CAF911...	123.0	[0..39]	[104..1]
SC61G_CIOIN - Protein transport protein Sec61 subunit gamma OS=Ciona intestinalis GN=SEC61G PE=3 SV=1	123.0	[0..39]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLLSRRRR YRAKCAKRSV RKFLPDLKCK SVERIKCQIK DLLILMVPSK DFYKNSLRFY  60
   61 KRCTKPDRRE FQRISIGIGV GFLIMGLIGF VVKLMHIPIV NIIMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1rh5B
Description:	The structure of a protein conducting channel
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits