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View Structure Prediction Details

Protein: Cpr56F-PA
Organism: Drosophila melanogaster
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr56F-PA.

Description E-value Query
Range
Subject
Range
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
123.0 [0..25] [215..1672]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAFTSIALL VCLAAWTHAE PPVPQNQYLP PNQSPQAPSN NYLPPTQGYQ SPSSNYLPPQ  60
   61 RAGGNGGAPS NSYGAPIAPP QGQYGAPALT GAIFKGGNGN GNGGYGGGNG NGNGYGQRD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEQYGPAKYE FKYDVQDYES GNDFGHMESR DGDLAVGRYY VLLPDGRKQI VEYEADQNGY  60
   61 RPTIRYEQVG NGNGNGNGNG RNGGGYDSNA QQGKFNGY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 15.065502
Match: PF00379.14
Description: No description for PF00379.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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