YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0292058, Obp...
Organism:	Drosophila melanogaster
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0292058, Obp....

Description	E-value	Query Range	Subject Range
gi\|54636617, gi\|... - gi\|54636617\|gb\|EAL26020.1\| GA12590 [Drosophila pseudoobscura pseudoobscura], gi\|125810319\|ref\|XP_001... gi\|54636617\|gb\|E... - GA12590-PA [Drosophila pseudoobscura], GA12590 [Drosophila pseudoobscura pseudoobscura] gi\|195151524, gi... - gi\|195151524\|ref\|XP_002016697.1\| GL10361 [Drosophila persimilis], gi\|194110544\|gb\|EDW32587.1\| GL1036...	106.0	[0..1]	[134..1]
gi\|5081569, gi\|5... - gi\|5081587\|gb\|AAD39455.1\|AF133643_1 pheromone binding protein [Ostrinia nubilalis], gi\|5081569\|gb\|AA...	104.0	[0..1]	[127..5]
gi\|48994196 - gi\|48994196\|emb\|CAG26914.1\| putative odorant-binding protein OBPjj11 [Anopheles gambiae] gi\|118792242, gi... - gi\|118792242\|ref\|XP_551868.2\| AGAP012322-PA [Anopheles gambiae str. PEST], gi\|116116807\|gb\|EAL38696....	103.0	[0..1]	[130..1]
gi\|2494874, gi\|4... - gi\|408473\|gb\|AAA21356.1\| OS-E, sp\|Q23970\|PBP6_DROME Pheromone-binding protein-related protein 6 prec...	101.0	[0..1]	[134..2]
gi\|5081561 - gi\|5081561\|gb\|AAD39442.1\|AF133630_1 pheromone binding protein [Ostrinia furnacalis]	101.0	[0..1]	[127..5]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTLFCIAL AAFLSMGQCN PDFRQIMQQC METNQVTEAD LKEFMASGMQ SSAKENLKCY  60
   61 TKCLMEKQGH LTNGQFNAQA MLDTLKNVPQ IKDKMDEISS GVNACKDIKG TNDCDTAFKV 120
  121 TMCLKEHKAI PGHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits