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View Structure Prediction Details

Protein: Or56a-PA
Organism: Drosophila melanogaster
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Or56a-PA.

Description E-value Query
Range
Subject
Range
gi|58394668, gi|... - gi|58394668|ref|XP_320874.2| ENSANGP00000019225 [Anopheles gambiae str. PEST], gi|55235068|gb|EAA006...
199.0 [0..1] [415..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKVKDLLLS PTTFEDPIFG THLRYFQWYG YVASKDQNRP LLSLIRCTIL TASIWLSCAL  60
   61 MLARVFRGYE NLNDGATSYA TAVQYFAVSI AMFNAYV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRDKVISLLR VAHSDIQNLM HEADNREMEL LVATQAYTRT ITLLIWIPSV IAGLMAYSDC  60
   61 IYRSLFLPKS VFNVPAVRRG EEHPILLFQL FPFGELCDNF VVGYLGPWYA LGLGITAIPL 120
  121 WHTFITCLMK YVNLKLQILN KRVEEMDITR LNSKLVIGRL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [258-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TASELTFWQM QLFKEFVKEQ LRIRKFVQEL QYLICVPVMA DFIIFSVLIC FLFFALTVGV  60
   61 PSKMDYFFMF IYLFVMAGIL WIYHWHATLI VECHDELSLA YFSCGWYNFE MPLQKMLVFM 120
  121 MMHAQRPMKM RALLVDLNLR TFIDIGRGAY SYFNLLRSSH LY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle