YRC Public Data Repository - Protein Structure Prediction

Protein:	Obp56e-PA
Organism:	Drosophila melanogaster
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Obp56e-PA.

Description	E-value	Query Range	Subject Range
gi\|33328855 - gi\|33328855\|gb\|AAQ09834.1\| CG8462 [Drosophila yakuba]	123.0	[0..1]	[131..1]
gi\|167865986, gi... - gi\|19224143\|gb\|AAL86413.1\|AF468212_1 odorant-binding protein precursor [Culex pipiens quinquefasciat...	110.0	[0..2]	[131..7]
FBpp0311428 - type=protein; loc=3R:complement(1798020..1798037,1798092..1798348,1798776..1798851,1798931..1799104)...	110.0	[0..5]	[131..34]
gi\|48994196 - gi\|48994196\|emb\|CAG26914.1\| putative odorant-binding protein OBPjj11 [Anopheles gambiae] gi\|118792242, gi... - gi\|118792242\|ref\|XP_551868.2\| AGAP012322-PA [Anopheles gambiae str. PEST], gi\|116116807\|gb\|EAL38696....	109.0	[0..1]	[130..1]
gi\|37778933 - gi\|37778933\|gb\|AAO74646.1\| odorant-binding protein 3-2 [Aedes aegypti]	109.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVFFVFAAL AALSLASAVG LTDSQKAEAK QRAKACVKQE GITKEQAIAL RSGNFADSDP  60
   61 KVKCFANCFL EQTGLVANGQ IKPDVVLAKL GPIAGEANVK EVQAKCDSTK GADKCDTSYL 120
  121 LYKCYYENHA QF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits