YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311727, Obp...
Organism:	Drosophila melanogaster
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311727, Obp....

Description	E-value	Query Range	Subject Range
gi\|17946714 - gi\|17946714\|gb\|AAL49387.1\| RH69634p [Drosophila melanogaster]	117.0	[0..1]	[131..1]
gi\|33328855 - gi\|33328855\|gb\|AAQ09834.1\| CG8462 [Drosophila yakuba]	114.0	[0..1]	[131..1]
gi\|48994196 - gi\|48994196\|emb\|CAG26914.1\| putative odorant-binding protein OBPjj11 [Anopheles gambiae] gi\|118792242, gi... - gi\|118792242\|ref\|XP_551868.2\| AGAP012322-PA [Anopheles gambiae str. PEST], gi\|116116807\|gb\|EAL38696....	107.0	[0..1]	[131..1]
gi\|37778931 - gi\|37778931\|gb\|AAO74645.1\| odorant-binding protein 3-1 [Aedes aegypti]	105.0	[0..1]	[130..1]
gi\|145651318, gi... - gi\|32135155\|emb\|CAD99000.1\| olfactory specific F protein [Drosophila simulans], gi\|195568613\|ref\|XP_... gi\|39840703 - gi\|39840703\|emb\|CAD91563.1\| Olfactory Specific F protein [Drosophila mauritiana] gi\|195502156, gi... - gi\|195502156\|ref\|XP_002098099.1\| GE24126 [Drosophila yakuba], gi\|194184200\|gb\|EDW97811.1\| GE24126 [D... gi\|194133525, gi... - gi\|195343851\|ref\|XP_002038504.1\| GM10580 [Drosophila sechellia], gi\|194133525\|gb\|EDW55041.1\| GM10580...	104.0	[0..4]	[130..19]
gi\|55240329, gi\|... - gi\|58385779\|ref\|XP_314202.2\| ENSANGP00000014514 [Anopheles gambiae str. PEST], gi\|55240329\|gb\|EAA096...	104.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLIVLSVI LAISAAELQL SDEQKAVAHA NGALCAQQEG ITKDQAIALR NGNFDDSDPK  60
   61 VKCFANCFLE KIGFLINGEV QPDVVLAKLG PLAGEDAVKA VQAKCDATKG ADKCDTAYQL 120
  121 FECYYKNRAH I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits