YRC Public Data Repository - Protein Structure Prediction

Protein:	Obp56a-PA
Organism:	Drosophila melanogaster
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Obp56a-PA.

Description	E-value	Query Range	Subject Range
gi\|54636611\|gb\|E... - GA11204-PA [Drosophila pseudoobscura], GA11204 [Drosophila pseudoobscura pseudoobscura] gi\|125810304, gi... - gi\|54636611\|gb\|EAL26014.1\| GA11204 [Drosophila pseudoobscura pseudoobscura], gi\|125810304\|ref\|XP_001...	111.0	[0..1]	[137..1]
gi\|33328855 - gi\|33328855\|gb\|AAQ09834.1\| CG8462 [Drosophila yakuba]	109.0	[0..1]	[132..1]
FBpp0311428 - type=protein; loc=3R:complement(1798020..1798037,1798092..1798348,1798776..1798851,1798931..1799104)...	106.0	[0..3]	[133..33]
gi\|145651318, gi... - gi\|32135155\|emb\|CAD99000.1\| olfactory specific F protein [Drosophila simulans], gi\|195568613\|ref\|XP_... gi\|39840703 - gi\|39840703\|emb\|CAD91563.1\| Olfactory Specific F protein [Drosophila mauritiana] gi\|195502156, gi... - gi\|195502156\|ref\|XP_002098099.1\| GE24126 [Drosophila yakuba], gi\|194184200\|gb\|EDW97811.1\| GE24126 [D... gi\|194133525, gi... - gi\|195343851\|ref\|XP_002038504.1\| GM10580 [Drosophila sechellia], gi\|194133525\|gb\|EDW55041.1\| GM10580...	104.0	[0..3]	[133..13]
gi\|58396184, gi\|... - gi\|58396184\|ref\|XP_321724.2\| ENSANGP00000017561 [Anopheles gambiae str. PEST], gi\|55233939\|gb\|EAA010...	104.0	[0..5]	[134..116]
gi\|39840707, gi\|... - gi\|39840707\|emb\|CAE00444.1\| Olfactory Specific F [Drosophila erecta], gi\|194898937\|ref\|XP_001979019....	104.0	[0..3]	[133..13]
gi\|37778933 - gi\|37778933\|gb\|AAO74646.1\| odorant-binding protein 3-2 [Aedes aegypti]	104.0	[0..1]	[133..1]
gi\|48994196 - gi\|48994196\|emb\|CAG26914.1\| putative odorant-binding protein OBPjj11 [Anopheles gambiae] gi\|118792242, gi... - gi\|118792242\|ref\|XP_551868.2\| AGAP012322-PA [Anopheles gambiae str. PEST], gi\|116116807\|gb\|EAL38696....	104.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSYFVIALS ALFVTLAVGS SLNLSDEQKD LAKQHREQCA EEVKLTEEEK AKVNAKDFNN  60
   61 PTENIKCFAN CFFEKVGTLK DGELQESVVL EKLGALIGEE KTKAALEKCR TIKGENKCDT 120
  121 ASKLYDCFES FKPAPEAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2erbA
Description:	AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits