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View Structure Prediction Details

Protein: gi|21626944, gi|...
Organism: Drosophila melanogaster
Length: 835 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21626944, gi|....

Description E-value Query
Range
Subject
Range
gi|22024213, gi|... - gi|22024213|ref|NP_611433.2| CG16716 [Drosophila melanogaster], gi|21626943|gb|AAF57536.2| CG16716 [...
565.0 [0..1] [835..1]

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Predicted Domain #1
Region A:
Residues: [1-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKKSPRPT YCEPNPYTRF FNAHKSLPPD KNGQKQEIYN RESVYVLSNK SRGKRRSGRE  60
   61 NNQPTWRRRG GGVNEDHIMV VTQDNTQQQR DKPLLTASQL DSICYDVIKE PPMQFHVNGT 120
  121 DIVPSIRGLR LSVCVEHTRF QLVAKVTRNM GFQHVPEHRL WNIQWSDSTP HHDLLRNMKR 180
  181 FQQINHFPGM VEICRKDLLS RNLNRMLKMF PGDYRIFPKT WLMPTDAYDV AIYANKHKRT 240
  241 FILKPYSAGQ GRGIWITTDL RTVGKREKLI CQTYIERPLL IDGYKFDLRV YTLVTSVDPL 300
  301 RIFVYNEGLA RFATQKYVPP TTGNSHNVFM HLTNYCLNRR NSQYMVGNGP EAGSKRKLSA 360
  361 FNKWLVDHNY DVGEFWASVD DAIIKTLISA WPTLKHNYNV CFPKHDKIQA SFQLLGFDIL 420
  421 VDWKLKPYIL EVNHTPSLSA D

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [442-835]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESVDMEVKRP LIRDTLNMLS TALVDKEQII RDDRTEHRAR LLRNIYNKKA AAQMPGYSSP  60
   61 IREVGGHDVR QACSIGALTQ QIAWEESHLG NYRRIMPPRD SSKVNYYCKF YEQNKQPMFA 120
  121 DTVASRRREQ LNLQAIQKHQ RERQQDLIQQ QQIHTQAQNR MGKHVRWPGD LVQGEQVNPV 180
  181 ILQSRRRREE AEAYAKKHRA LIAREIQRQK EQLLAPTCAK ERLGIWQSVR REKRSQFSPK 240
  241 RGSSITKAYR RKQQRNLSLR ARQQRMIEME AQRDAKFLEQ HAQKQRLEGG RKTGQSESPN 300
  301 LLSKITAKSK TSLKKKMKPK GKPELKKETL QEGNHCQMTK SKVELTPGSK ARAFANWTAR 360
  361 TINEAETDQL LSWRKERANQ LNETRLRELV SKKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle