YRC Public Data Repository - Protein Structure Prediction

Protein:	cer-PA
Organism:	Drosophila melanogaster
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cer-PA.

Description	E-value	Query Range	Subject Range
gi\|47221526 - gi\|47221526\|emb\|CAG08188.1\| unnamed protein product [Tetraodon nigroviridis]	113.0	[0..1]	[78..20]
gi\|37786769 - gi\|37786769\|gb\|AAO64471.1\| cathepsin L precursor [Fundulus heteroclitus]	112.0	[0..1]	[78..21]
gi\|68369812 - gi\|68369812\|ref\|XP_707718.1\| PREDICTED: similar to cathepsin L isoform 3 [Danio rerio]	112.0	[0..1]	[76..20]
gi\|157278115, gi... - gi\|50251128\|dbj\|BAD27581.1\| cathepsin L [Oryzias latipes], gi\|157278115\|ref\|NP_001098156.1\| cathepsi...	112.0	[0..1]	[77..20]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVSDEEWV EYKSKFDKNY EAEEDLMRRR IYAESKARIE EHNRKFEKGE VTWKMGINHL  60
   61 ADLTPEEFAQ RCGKKVPPN

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Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1cjlA
Description:	CRYSTAL STRUCTURE OF A CYSTEINE PROTEASE PROFORM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits