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View Structure Prediction Details

Protein: prod-PA
Organism: Drosophila melanogaster
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prod-PA.

Description E-value Query
Range
Subject
Range
gi|7678867 - gi|7678867|dbj|BAA95159.1| prod [Drosophila simulans]
612.0 [0..1] [346..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGKMDRRKK RTSSEQYQMY IDMMESDPIF ATGRVPRDYD LNYLTKKWKE LSDRLNKCSS  60
   61 GPTLTPEEWR KRLNDWKNTT RCKYRRSLLS TEKDISMTSV ETRALDLFGK VPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGGETMLNLK SEKDEHDDEM EELGQRTSVA FQKELQAAVE EAINDEVDEE EMVEEHVDHE  60
   61 DMMEENLAET GITASTTAVN TGGGTYRTIV VDNTSFEHVE EDPQTVQPHA VEYVTSRRPA 120
  121 APVINPGTAS S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [245-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNKLINGELP VKRMRTQPRE QIIYEVKNAP RCISNMQAVP PLHSTKLERE PSSLTSALSS  60
   61 SDAQQIAHQL KRLADIKFET LQFEIARFKF NNPGFQYDPP SL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle