| Protein: | Vha100-3-PA |
| Organism: | Drosophila melanogaster |
| Length: | 904 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vha100-3-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
818.0 | [0..11] | [902..1] |
|
Region A: Residues: [1-534] |
1 11 21 31 41 51
| | | | | |
1 MRVFKKRQTK VKSFFRSEDM DLCQLLLHTE NAFDCLIEVG HHGAVQFNNV YDEDRLLNNL 60
61 YSKKVTQCYE LLRIVDSLHT YIVQLHVNEI FYPDVDRENR LKEKDLAKYS DSLKRIHVEA 120
121 SAVTEHYYRL DSRRNRMMEH SFALNKANKY MVSDMGSELL YSESTVIGLV QDATTTSGAY 180
181 PAHLNYMIGC IRADKFYSFE LLLYRLCSFN LIIRFSEMPS PVYEYHYGYK PERVRKFAIL 240
241 MMASSTMIWP KVLKICAHYH VNIYDCPSSA SQREDKVKEL SQEIVNVEKV LKEAELMRRQ 300
301 ILEVAGRDLF IIRVNLRKAL KVYDLMNRLR LVGGVEVPRY LLAEVYIPSS DVPEVEVILR 360
361 NASRISGGAD NIDSSDEDEM NDMKTMPNTT PYPIEADFQP LEDMSAGAIL LKKNRLVNHM 420
421 PPTYFRLNKF TRGFQNLIDA YGMADYKELN PAPYTIITFP FLFAVMFGDL GHGILLILFS 480
481 SLMIWKHREI EKYQINATSE NEILNILYAG RYIILLMGVF SVYMGLVYNI VMAK
|
| Detection Method: |  |
| Confidence: | 4.69897 |
| Match: | 1ciiA |
| Description: | COLICIN IA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [535-777] |
1 11 21 31 41 51
| | | | | |
1 GFNLFGSSWS CRYNETTVYD PAFHVTLDSS HPHFYSGHPY PLGMDPVWAV CGQDSITTTN 60
61 SLKMKMAIVL GISQMMFGLG LAAANCVLMN RKADLILVVI PQMIFMLCLF GYLVFLIFYK 120
121 WMSYGGHKPA PYNAACAPSV LITFINMMLM KKEDPVENCL DYMYPNERMI EFALVGIAFC 180
181 TIPILLAGKP IYLMRRRRKM QQERERDFKR MRRQTIAEMR STMRYTDDDN SETSRQKSVD 240
241 NEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [778-904] |
1 11 21 31 41 51
| | | | | |
1 EHEMSEIWIH SGIHTIETVL GSVSHTASYL RLWALSLAHD QLSDVLWHMV LTKGFANTLP 60
61 LYYGVPVLMA TFFAWAILTV AILVMMEGLS AFLHTLRLHW VEFQSKFFGG AGESFKAFNF 120
121 PTSNQRS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
