Protein: | Vha100-3-PA |
Organism: | Drosophila melanogaster |
Length: | 904 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vha100-3-PA.
Description | E-value | Query Range |
Subject Range |
|
818.0 | [0..11] | [902..1] |
Region A: Residues: [1-534] |
1 11 21 31 41 51 | | | | | | 1 MRVFKKRQTK VKSFFRSEDM DLCQLLLHTE NAFDCLIEVG HHGAVQFNNV YDEDRLLNNL 60 61 YSKKVTQCYE LLRIVDSLHT YIVQLHVNEI FYPDVDRENR LKEKDLAKYS DSLKRIHVEA 120 121 SAVTEHYYRL DSRRNRMMEH SFALNKANKY MVSDMGSELL YSESTVIGLV QDATTTSGAY 180 181 PAHLNYMIGC IRADKFYSFE LLLYRLCSFN LIIRFSEMPS PVYEYHYGYK PERVRKFAIL 240 241 MMASSTMIWP KVLKICAHYH VNIYDCPSSA SQREDKVKEL SQEIVNVEKV LKEAELMRRQ 300 301 ILEVAGRDLF IIRVNLRKAL KVYDLMNRLR LVGGVEVPRY LLAEVYIPSS DVPEVEVILR 360 361 NASRISGGAD NIDSSDEDEM NDMKTMPNTT PYPIEADFQP LEDMSAGAIL LKKNRLVNHM 420 421 PPTYFRLNKF TRGFQNLIDA YGMADYKELN PAPYTIITFP FLFAVMFGDL GHGILLILFS 480 481 SLMIWKHREI EKYQINATSE NEILNILYAG RYIILLMGVF SVYMGLVYNI VMAK |
Detection Method: | |
Confidence: | 4.69897 |
Match: | 1ciiA |
Description: | COLICIN IA |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [535-777] |
1 11 21 31 41 51 | | | | | | 1 GFNLFGSSWS CRYNETTVYD PAFHVTLDSS HPHFYSGHPY PLGMDPVWAV CGQDSITTTN 60 61 SLKMKMAIVL GISQMMFGLG LAAANCVLMN RKADLILVVI PQMIFMLCLF GYLVFLIFYK 120 121 WMSYGGHKPA PYNAACAPSV LITFINMMLM KKEDPVENCL DYMYPNERMI EFALVGIAFC 180 181 TIPILLAGKP IYLMRRRRKM QQERERDFKR MRRQTIAEMR STMRYTDDDN SETSRQKSVD 240 241 NEE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [778-904] |
1 11 21 31 41 51 | | | | | | 1 EHEMSEIWIH SGIHTIETVL GSVSHTASYL RLWALSLAHD QLSDVLWHMV LTKGFANTLP 60 61 LYYGVPVLMA TFFAWAILTV AILVMMEGLS AFLHTLRLHW VEFQSKFFGG AGESFKAFNF 120 121 PTSNQRS |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.