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View Structure Prediction Details

Protein: CG18537-PA
Organism: Drosophila melanogaster
Length: 188 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG18537-PA.

Description E-value Query
Range
Subject
Range
CG18536-PA - This gene is referred to in FlyBase by the symbol Dmel\CG18536 (CG18536, FBgn0034322). It is a prote...
265.0 [0..6] [188..9]
gi|125809967, gi... - gi|54636475|gb|EAL25878.1| GA14977-PA [Drosophila pseudoobscura], gi|125809967|ref|XP_001361300.1| G...
229.0 [0..24] [188..1]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGYSSVLI LLAVWLISRC GAARKWEYEP VLILTTSSDD SLIKLESSIV RLGRGKFGIS  60
   61 ARVEWNYDTT EETMVEAVVY RSNSGDESDY KLLPWAIPKQ TFYDYLNSYY KDVIMKNFAP 120
  121 CSNVPQFKGK FQPPWPKRTY IGDKCVFEAE GFPDIVPPGF YKIIFNCTGP DQPSWSFIGI 180
  181 FKIINKMF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.73
Match: 2agcA
Description: Crystal Structure of mouse GM2- activator Protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle