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View Structure Prediction Details

Protein: nopo-PA
Organism: Drosophila melanogaster
Length: 435 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nopo-PA.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
190.0 [0..10] [434..1767]

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Predicted Domain #1
Region A:
Residues: [1-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLNCVICA ELFGQADEVF ATVCGHMFHH NCLNQWLDRS KTCPQCRNKC TTRNIFRVYF  60
   61 NLANLDVSHI DVGSLQEQLD NAMLSMKMVE KERNKDEQQI RDLKETQKKC LKTIAGLEQK 120
  121 VQKKDFLISS YVEQIGVLKS DAHVVDGLRK ENKTLKSQIQ SMEGISAILA AGSADADRLL 180
  181 KNEADPHVLA NWVSTLKREL RQCESKKTEL RNVVKVVQND LRKEIELKRK LEERVSHLES 240
  241 DLYQAQEKLQ AFENKTAYLD SPNASCGLNS NILALKREER RTTISPTVKE NIKRIEESTS 300
  301 PYLNIKSSSV GLAHLLNTKG NIGLAKSKIS PIKGVGGGVS MTSGTIRKTS SDLSEKYSIF 360
  361 KKPRLLLGSS SSSALTATTG SNFVYNGMGG SEKVDPFAQR AEEEGLSTIR SSTALSRNVN 420
  421 QRLKAGSLRN FNLGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle