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View Structure Prediction Details

Protein: CG5756-PA
Organism: Drosophila melanogaster
Length: 1205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5756-PA.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
423.0 [0..127] [1197..417]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPPSSCLWL ALALLVGVAQ AQSGSREHFE DADKSSEYTD QQFDLRHTIP GEPGLDYPIL  60
   61 SSPPRTSFVC KGRHEGYYAD VESRCQAFRI CAHTARSPQG FGFLCPNGTL FSQKNFVCDW 120
  121 YRNVNCDDSE KYYEMNEEKT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1wawA
Description: Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [141-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGSTHEMMER VRHMMEYPMK TISKALQQTQ SQSQNPHHSL SKDLSGASGV LSQPAAIKLN  60
   61 DPETQVVGRG EDVKSEPLSA VQLGSINPGD SEDEGIYVNS LGELSSDPGI QFDHTNAHIV 120
  121 AEYPREYHYQ KQKNFAERVN AGLDILTDSE SNSGEAMAPD YIKHIRNTKD EAVQLDLVSN 180
  181 INNLLDEVST DVDPSISGYQ SMAPPKVKQP FRFLSRGFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [360-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRENGKGSS SSGYGYIKPK QTPSTVRFTH TFPKSTSTSS TTSTTTESAT ESIEHLLIAP  60
   61 TLPPAEDEEV STLVASEVTS TPAAEPLKVL APPLSEVVTA GEESAIESIG QAAALTASLP 120
  121 ISEDIVRVEQ SSEASEKNDA HQEAAKLLLA GVQLTSHNDE QHLERNE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [527-700]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVVTSTTTAS PITPVMVTST EVVTEISSTQ ERIRGYRRNR PGVMLKRAHI RPLPTVRTTT  60
   61 AATTPRSTTP TRSYLERLAA SRLRLSRLSQ ATRSTAKATT TLPSTTTTPA TTTTVSSFQQ 120
  121 IRGGAEPGPN KRLTVRDIDR ETKVAPSKAN WETVHSNLQR FQVQRGNRVY TPAT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [701-788]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RASVGSSNAA TTSSTTSAPR SYIAATSTRA TVNVNRGKNR YSNFKTQAPV QRTRGTTTTS  60
   61 TTQRPTSSLS SLNQHISALA SNYNGGYS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [789-884]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNQATQISKP IPQSPSHVYA THTASDIAGH ASQSQTTSSL TPASAFLSFD KLTRAIVDES  60
   61 VLQNFKSAQS QGSNQAQQNQ RQQQQQHQVA KQQHHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [885-1012]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSSYVKPAA APAISSLTVP QRPQQTSQSS VPPGIVIARA EGQRIAPNSA SSIISSLATQ  60
   61 APVTSNQGNS YVSLNDFLNN KFGQSPAASS NVHSAATLQQ EQQPHYQQQA TLSLQQQQQQ 120
  121 QRQPVLQQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1013-1096]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHQLVQQQRQ PVQQQLSFIS QQYQQPQQQS IYQQYKQPQQ QQQQQHFQQQ QQRTTIHTNQ  60
   61 QPYLTPNIFV PYHQQQQQLP QFPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1097-1205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAPPVSISTG NIAQGPVIAG RHVDHLNVQL PTLPNGLIPG LQLAQKRSDV SSSQLQLTDT  60
   61 KGKNNFSGSG KSRERAFYAG RTSYDVPQSS VGRLPNDITQ QLRRRLRRF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle