YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309243
Organism:	Drosophila melanogaster
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309243.

Description	E-value	Query Range	Subject Range
CG5036-PB - This gene is referred to in FlyBase by the symbol Dmel\CG5036 (CG5036, FBgn0028743). It is a protein...	255.0	[0..1]	[271..1]
gi\|13562149, gi\|... - gi\|39645828\|gb\|AAH63490.1\| Regulator of G-protein signaling 20 [Homo sapiens], gi\|13654235\|ref\|NP_00... gi\|114620131 - gi\|114620131\|ref\|XP_001151182.1\| PREDICTED: regulator of G-protein signalling 20 isoform 5 [Pan trog...	225.0	[0..36]	[262..4]
RGS20_MOUSE - Regulator of G-protein signaling 20 OS=Mus musculus GN=Rgs20 PE=1 SV=1	222.0	[0..38]	[262..5]
gi\|114620123 - gi\|114620123\|ref\|XP_001151118.1\| PREDICTED: regulator of G-protein signalling 20 isoform 4 [Pan trog...	217.0	[0..46]	[262..160]
RGS20_BOVIN - Regulator of G-protein signaling 20 OS=Bos taurus GN=RGS20 PE=1 SV=2	213.0	[0..37]	[262..136]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCTVSELPS GCRLRGMTAS SQQSAANNSG NNGNGNGNGG GGGVVGGGGS LGGVSPTVGG  60
   61 SVGILGSTSN VLQESNATTF QRPQSQKPCC FCWCCCCSCS CLAIKNADEN AP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKRDLVNAEF LDGEQPTLEE IRSWGKSFDK LMKSTAGRKV FQNFLRSEFS EENILFWLAC  60
   61 EDLKKENSPE LVEEKARLIY EDYISILSPR EVSLDSRVRE IVNRNMIEPT THTFDEAQIQ 120
  121 IYTLMHRDSY PRFLNSQKFK TLAQLQDNSN AGSKADSPT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	1zv4X
Description:	Structure of the Regulator of G-Protein Signaling 17 (RGSZ2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits