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View Structure Prediction Details

Protein: CG6370-PA
Organism: Drosophila melanogaster
Length: 634 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6370-PA.

Description E-value Query
Range
Subject
Range
gi|36049 - gi|36049|emb|CAA68393.1| unnamed protein product [Homo sapiens]
778.0 [0..7] [629..9]

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Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLGLVIFC VLVASGPTWS ARTVDSHLGQ KDLSRLQKVF VDGFGSSDLQ SIFFSSLNIQ  60
   61 LTDATQKEPL CKKIATLHSE SKLNSFEKDY YYIGASRNLG CSAKIDEGLL SKVYSSLNSE 120
  121 LGSSQEIFYR VVTHKVLGVE INEATQEKLV KRLQELLKKD DTLSGLGYAF NVAPLLGASA 180
  181 SFIANRVEDA IVQADEVDGK LLQFEGGLSI TSLIINGAFG VSKTFNKPVP ITADQAVKFA 240
  241 NYFLSRRSVQ TAKGAHVLIE ALKTISGADK IAPVCVQLIG NGQLDAQSPT LNVAVVDLLG 300
  301 KPLSPAPKVI NAKVIRKKDS SVLADKITVA SKSSDK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1n4pB
Description: Protein Geranylgeranyltransferase type-I Complexed with Geranylgeranyl Diphosphate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein prenyltransferase activity 1.8736596502344 bayes_pls_golite062009
protein geranylgeranyltransferase activity 1.36178521139792 bayes_pls_golite062009
binding 0.695640628560574 bayes_pls_golite062009
catalytic activity 0.489632510747336 bayes_pls_golite062009
protein binding 0.434736529133912 bayes_pls_golite062009
transferase activity 0.324269689643948 bayes_pls_golite062009
Rab geranylgeranyltransferase activity 0.147607748607409 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [337-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTYVADLASL KPARGVYQAE LSADGVYTQT LQFKVLGRVK VQSLEVGIAE SDASAATRKQ  60
   61 SVTYPGKLQE VLSADSTQKL LLKAVLVDES TSKPLAVHQA FVRLYNKKTD KEIIFVAEQD 120
  121 SSKAYKFDMD VGNNGKNFNY QSGTYSIYLT VGDSSLSNSF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [497-634]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EWLVAEVQLK FNEDKEVKPK NTSGPLPEII HQFRVPDKRP PRIVSDIFTG LCITPLVLLF  60
   61 VFWGKLGINV SNLTLAPSTI GFHLGFGGIL VLFFVFWLQL NMFQTLRLLI PIAVFTFLAG 120
  121 NRLLRRLYAQ RNSKASAS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle