YRC Public Data Repository - Protein Structure Prediction

Protein:	CG18186-PA
Organism:	Drosophila melanogaster
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG18186-PA.

Description	E-value	Query Range	Subject Range
gi\|109067205 - gi\|109067205\|ref\|XP_001095397.1\| PREDICTED: similar to chromobox homolog 3 [Macaca mulatta]	105.0	[0..1]	[84..270]
gi\|32479358 - gi\|32479358\|gb\|AAP83844.1\| chromodomain Y-like protein [Macaca fascicularis]	94.0	[0..19]	[84..4]
gi\|221307494, gi... - gi\|80476758\|gb\|AAI08726.1\| Chromodomain protein, Y-like [Homo sapiens], gi\|25777619\|ref\|NP_736607.1\|...	93.0	[0..19]	[84..4]
gi\|57617080, gi\|... - gi\|57617080\|ref\|NP_083355.2\| neuronal pentraxin with chromo domain isoform 3 [Mus musculus], gi\|3762...	93.0	[0..18]	[84..7]
gi\|50734076 - gi\|50734076\|ref\|XP_418964.1\| PREDICTED: similar to chromodomain protein, Y chromosome-like isoform b...	93.0	[0..19]	[84..4]
gi\|42718272 - gi\|42718272\|gb\|AAR37359.1\| histone h3/lys9 methylation reporter fusion protein [synthetic construct]	92.0	[0..18]	[75..231]
gi\|76668611 - gi\|76668611\|ref\|XP_584224.2\| PREDICTED: similar to chromodomain protein, Y chromosome-like isoform b...	91.0	[0..22]	[80..94]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKSIDLGL GVRNVKEKSS EYIVEKFLGK RYLRGRPQYL TKWEGYPIEQ CTWEPLENLG  60
   61 KCMTLIADYE AELFQQSREK KNDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	1pdqA
Description:	Polycomb chromodomain complexed with the histone H3 tail containing trimethyllysine 27.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.374364652893655	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: