YRC Public Data Repository - Protein Structure Prediction

Protein:	Sip1-PA
Organism:	Drosophila melanogaster
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sip1-PA.

Description	E-value	Query Range	Subject Range
gi\|7448486 - pir\|\|F70369 carboxyl-terminal proteinase - Aquifex aeolicus gi\|15606169, gi\|... - gi\|2983365\|gb\|AAC06952.1\| carboxyl-terminal protease [Aquifex aeolicus VF5], gi\|15606169\|ref\|NP_2135...	221.0	[0..5]	[292..68]
gi\|78223060, gi\|... - gi\|78223060\|ref\|YP_384807.1\| peptidase S41A, C-terminal protease [Geobacter metallireducens GS-15], ...	217.0	[0..1]	[287..71]
gi\|39996871, gi\|... - gi\|39996871\|ref\|NP_952822.1\| carboxy-terminal processing protease [Geobacter sulfurreducens PCA], gi...	214.0	[0..1]	[287..71]
gi\|88789681, gi\|... - gi\|88813048\|ref\|ZP_01128290.1\| carboxyl-terminal protease [Nitrococcus mobilis Nb-231], gi\|88789681\|...	210.0	[0..6]	[287..74]
gi\|53688967 - gi\|53688967\|ref\|ZP_00112412.2\| COG0793: Periplasmic protease [Nostoc punctiforme PCC 73102]	209.0	[0..6]	[295..86]
gi\|48764959 - ref\|ZP_00269510.1\| COG0793: Periplasmic protease [Rhodospirillum rubrum] gi\|83575482, gi\|... - gi\|83592568\|ref\|YP_426320.1\| C-terminal processing peptidase S41A [Rhodospirillum rubrum ATCC 11170]...	209.0	[0..1]	[286..68]
gi\|77545355, gi\|... - gi\|77919272\|ref\|YP_357087.1\| periplasmic protease [Pelobacter carbinolicus DSM 2380], gi\|77545355\|gb...	208.0	[0..8]	[287..77]
gi\|110168962, gi... - ref\|ZP_00328925.1\| COG0793: Periplasmic protease [Trichodesmium erythraeum IMS101], gi\|113477914\|ref...	208.0	[0..7]	[284..94]
tr\|Q87UG9\|Q87UG9... - Carboxyl-terminal protease family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPT... gi\|28872441, gi\|... - gi\|28872441\|ref\|NP_795060.1\| carboxyl-terminal protease family protein [Pseudomonas syringae pv. tom... gi\|213971177, gi... - gi\|213971177\|ref\|ZP_03399295.1\| carboxyl-terminal protease family protein [Pseudomonas syringae pv. ...	207.0	[0..1]	[287..83]
gi\|67921801, gi\|... - gi\|67921801\|ref\|ZP_00515318.1\| Peptidase S41A, C-terminal protease [Crocosphaera watsonii WH 8501], ...	207.0	[0..7]	[287..96]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPTSPKTP TPPTLPPGVT KTCHIVKRPD FDGYGFNLHS EKVKPGQFIG KVDADSPAEA  60
   61 AGLKEGDRIL EVNGVSIGSE THKQVVARIK AIANEVRLLL IDVDGKALEV KPASPPAAAC 120
  121 NGNGSASQNG YEGTKQEMPG ASANISSISM VSTKRSSNAS SIQSGSTMNA SDLDVVDRGI 180
  181 PAVAAPVAIT PPPVQNGSKP SSPINNNTLM STPPPPSATK AGINNNGSVY NTNGNGTNGM 240
  241 TTPTTPPPPT SGYKAGTLHL PMTAAEMRAK LASKKKYDPK NESVDLKKKF DIIQKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1fc6A
Description:	Photosystem II D1 C-terminal processing protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.06555339437525	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: