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View Structure Prediction Details

Protein: l(2)k07824-PA
Organism: Drosophila melanogaster
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(2)k07824-PA.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
457.0 [0..52] [504..1247]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDESSDGL EELQSLKALY GQQEQEKPAK IKRERYIPKA SQAKELNYVE VPMEKVLFGD  60
   61 RQRLLTNLAK SVGQKLPNDD EDEQEENPGQ AKPGDKRKAA WSDSDDEDLQ VGDVKKATKH 120
  121 TGPLNHLRKD KSYKEYLTAR FQRTLNQPKW AEKKVKNEDD EDVSSDEELL RTVGFIDRKA 180
  181 RNSDL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQKTLNFKRV KDLNRATYAE GNATSIQFHP TSTAALVAGM NGLATIYAVD GQKNERLHNM  60
   61 RFKKFPLACS RIAPCGTRAF FGSVKPFYYS YDLLEAKESK LKLPGAMEFM HRFEVSPCGK 120
  121 FIVTAGKFGA IHLLTAKTNE LLHSFKQEGK VKGFTWSSDS KRILVCGSTS NVSVLNLRQN 180
  181 LIEHIFMDDG CIHGESIQLS PNQRLLATGS QEGVVNIYDY ESIFASKAPQ PEKRFMNLRT 240
  241 AITDLQFNHS SELLAMCSSE APNAFKLAHF PSATVYSNFP AQNEKVGFVT SMAFSPHSSF 300
  301 LAFATKGKQV PLFRLKYFKG Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle