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View Structure Prediction Details

Protein: FBpp0309034, CG8...
Organism: Drosophila melanogaster
Length: 960 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309034, CG8....

Description E-value Query
Range
Subject
Range
gi|109481610 - gi|109481610|ref|XP_001076923.1| PREDICTED: similar to Membralin [Rattus norvegicus]
783.0 [0..30] [565..7]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVLPENAA EIAVANAINN INGNGNGNGR NRVLPGGLGG GGQNNMMNMR DRLFHAIYFR  60
   61 AAATYAELVP RKVQLTIEFL LLAKALLFFF TLIYVHNSFI KNPCTCLQDV KNWPREGVIR 120
  121 VEIIPHLAEK RAIWQGIKRD QEIVRSLKDS YYYGIGPQTR QNHETLKRYE SILGKLGLPV 180
  181 RPTFA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSNESLYYYF DAINILDTYD HPNAIQLKNE EDDEEQYIVE YSLEYGHLRL SSSTRKRLRI  60
   61 PVLTVQLDPN TDKCFGDSLT RYLLKRLLGY DDLLMASVRT IAEQEENKGY LRNVITGEHY 120
  121 RFVSMWWAAW SSYPAAFCVM LLFTFSVSML LRYSHHQIFV FIVDLLQMLE YNVSAR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [362-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPIAPLLTVI LALVGMEAIM SEFFNDTTTA FYIILIVWIA DQYDAICCHT SITKRHWLRF  60
   61 FYLYHFAFYA YHYRFSGQYR TLALLSSYLF TQHSMVFFFH RYELPAIMAQ HQVFII

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [478-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRNQGAAAAA AAAAAGAGGA EAAGGGAGAG AAAGGQQGDG GAGGGGIGAG QQASMQRARL  60
   61 IVTRLFSQLA AQRHQQEPRP PGPTAAVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [566-894]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VALANLRRLP VVGQLLQGRE QFATVRRVFL GHGGNARLMQ VRLQRINVAD IPGLRNQVAA  60
   61 AMAAAGAAQR GQSAATDEPT IGDVATTDVA AAADAAATPA ANDAADVETN QGRKQPTTSS 120
  121 INDAVATGAE GAQDKPGQEK VEVVENSGQE NLQHGDGDGQ IAGMSKTLEN LNFVAADIIN 180
  181 MSDETTVASS PPTNGTQQPD QTLIHTHVHV HQTQPKARQL ENNLPELLKA EGGASAATAS 240
  241 GEKQSCPLQA PSIMNDQQQQ QQQQQRQKNK PDEPATATVA TSAVATSKQS SGPGATEVGV 300
  301 VGAAGGAEAT ARPMMDDRQT VDFIEGDSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [895-960]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSAANCQLNA GANHKAQEQQ LMKTSQHTSN QVTTAAATGA AAGTPATVTQ ATGATAAMGT  60
   61 AETSAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.522879
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle