YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8315-PA
Organism:	Drosophila melanogaster
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8315-PA.

Description	E-value	Query Range	Subject Range
PX11A_RAT - Peroxisomal membrane protein 11A OS=Rattus norvegicus GN=Pex11a PE=1 SV=1	246.0	[0..1]	[239..1]
PX11A_MOUSE - Peroxisomal membrane protein 11A OS=Mus musculus GN=Pex11a PE=1 SV=1	245.0	[0..1]	[239..1]
gi\|60835489 - gi\|60835489\|gb\|AAX37141.1\| peroxisomal biogenesis factor 11A [synthetic construct]	243.0	[0..1]	[239..1]
PEX11A - peroxisomal biogenesis factor 11 alpha gi\|157928610, gi... - gi\|60823999\|gb\|AAX36664.1\| peroxisomal biogenesis factor 11A [synthetic construct], gi\|157928610\|gb\|...	243.0	[0..1]	[239..1]
gi\|55642619 - gi\|55642619\|ref\|XP_510585.1\| PREDICTED: peroxisomal biogenesis factor 11A [Pan troglodytes]	241.0	[0..1]	[239..1]
gi\|73951475 - gi\|73951475\|ref\|XP_545854.2\| PREDICTED: similar to peroxisomal biogenesis factor 11A [Canis familiar...	237.0	[0..1]	[239..1]
gi\|54637200\|gb\|E... - GA20979-PA [Drosophila pseudoobscura], GA20979 [Drosophila pseudoobscura pseudoobscura] gi\|125811851, gi... - gi\|54637200\|gb\|EAL26603.1\| GA20979 [Drosophila pseudoobscura pseudoobscura], gi\|125811851\|ref\|XP_001...	234.0	[0..1]	[241..1]
gi\|109082324 - gi\|109082324\|ref\|XP_001093381.1\| PREDICTED: similar to peroxisomal biogenesis factor 11A [Macaca mul...	231.0	[0..1]	[239..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLVQLNNQ AGGRDKIARL IQYASRAMWD SLESANSNPA LVDNFKTVEY ILSTFRKLLR  60
   61 FGKCVDVFYG ALKTIHHPDL NIRVTLTLSK LSQSLFLFAD HFLWLARTGL TAVNAKRWSN 120
  121 IANKYWLFSI IMNLCRDFYE ILRVLDLHRS GSKSGISRCR IPASINSPED FKRLALQSYV 180
  181 LMQGHKDIVV DTVKNACDFF IPLTALGYTS LTPRTIGLLG AISSLAGLWA LLEPRAKLTP 240
  241 A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits