YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21627193, gi\|...
Organism:	Drosophila melanogaster
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21627193, gi|....

Description	E-value	Query Range	Subject Range
gi\|119617230 - gi\|119617230\|gb\|EAW96824.1\| biogenesis of lysosome-related organelles complex-1, subunit 1 [Homo sap... BL1S1_PONAB - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN=BLOC1S1 PE=2 SV=2 gi\|55638225 - gi\|55638225\|ref\|XP_509120.1\| PREDICTED: similar to GCN5-like 1; GCN5L1 [Pan troglodytes]	176.0	[0..1]	[121..33]
CE00629 - status:Confirmed UniProt:Q22616 protein_id:CAA83011.1	167.0	[0..1]	[124..1]
ENSPTRT00000009310 - null BL1S1_BOVIN - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus GN=BLOC1S1 PE=2 SV=1 BL1S1_PONPY - Biogenesis of lysosome-related organelles complex-1 subunit 1 - Pongo pygmaeus (Orangutan) BL1S1_PONAB - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN=BLOC1S1 PE=2 SV=1 BLOC1S1 - biogenesis of lysosomal organelles complex-1, subunit 1 BL1S1_RAT - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Rattus norvegicus GN=Bloc1s1 PE=3 S... CCDS8889.1_1 - null gi\|149756543 - gi\|149756543\|ref\|XP_001504825.1\| PREDICTED: similar to Biogenesis of lysosome-related organelles com...	165.0	[0..1]	[121..5]
BL1S1_MOUSE - Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Mus musculus GN=Bloc1s1 PE=1 SV=2	164.0	[0..1]	[121..5]
gi\|157774079 - gi\|157774079\|ref\|XP_001665105.1\| hypothetical protein CBG09808 [Caenorhabditis briggsae AF16] gi\|187031298, gi... - gi\|39590604\|emb\|CAE64974.1\| Hypothetical protein CBG09808 [Caenorhabditis briggsae], gi\|187031298\|em...	156.0	[0..1]	[122..7]
gi\|51950091, gi\|... - gi\|51950091\|gb\|AAH82449.1\| MGC84073 protein [Xenopus laevis], gi\|148235775\|ref\|NP_001087901.1\| MGC84...	153.0	[0..1]	[121..5]
gi\|109097086 - gi\|109097086\|ref\|XP_001095809.1\| PREDICTED: similar to Biogenesis of lysosome-related organelles com...	153.0	[0..17]	[121..7]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKEHHKEQA KRKQEQEVRR KEAIEASNEL TQSLVDTLNV GVAQAYLNQK RLDAEAKQLH  60
   61 LGATNFAKQT HQWLQLIDQF STALKDLGDV ENWARSIEGD MHTINQTLEL AYKASRATQT 120
  121 SSGAGTSLEA STSASASANP SAT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.568636
Match:	PF06320.4
Description:	No description for PF06320.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.987	N/A	N/A	a.7.12	Description not found.
View	Download	0.960	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.959	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.955	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.901	N/A	N/A	a.7.7	BAG domain
View	Download	0.898	N/A	N/A	a.7.7	BAG domain
View	Download	0.848	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.662	N/A	N/A	a.2.6	Effector domain of the protein kinase pkn/prk1
View	Download	0.644	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.619	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits