YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0302048, FBp...
Organism:	Drosophila melanogaster
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0302048, FBp....

Description	E-value	Query Range	Subject Range
gi\|118790051, gi... - ref\|XP_317991.1\| ENSANGP00000010687 [Anopheles gambiae], gi\|118790051\|ref\|XP_317991.3\| AGAP004818-PA... AGAP004818-PA - mRpS16: 28S ribosomal protein S16, mitochondrial\|protein_coding\|2L:3858864:3859405:1\|gene:AGAP004818	154.0	[0..1]	[128..1]
gi\|157123704, gi... - gi\|157123704\|ref\|XP_001653853.1\| 28S ribosomal protein S16, mitochondrial [Aedes aegypti], gi\|108874...	149.0	[0..1]	[128..1]
RT16_PONAB - 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1 RT16_PONPY - 28S ribosomal protein S16, mitochondrial precursor - Pongo pygmaeus (Orangutan)	148.0	[0..11]	[129..10]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	147.0	[0..11]	[129..10]
gi\|114631245 - gi\|114631245\|ref\|XP_508171.2\| PREDICTED: similar to CGI-132 protein [Pan troglodytes]	147.0	[0..3]	[129..122]
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	147.0	[0..11]	[128..10]
gi\|109089318 - gi\|109089318\|ref\|XP_001103151.1\| PREDICTED: mitochondrial ribosomal protein S16 [Macaca mulatta]	146.0	[0..11]	[129..10]
RT16_BOVIN - 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2	145.0	[0..11]	[129..10]
gi\|125811130, gi... - gi\|54636935\|gb\|EAL26338.1\| GA21001-PA [Drosophila pseudoobscura], gi\|125811130\|ref\|XP_001361759.1\| G...	144.0	[0..1]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSPASGIG RFYAKSAKII RFVRLGCTNR PFYHIVVMER RKNQHQPVIE QVGSFDPLPN  60
   61 DYNERLVALN TERIRYWLGK GAHLSTPAAE LLGIAGLLPI HPRTYMTAWR NRRTAAEAEA 120
  121 SPEKAESTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits