YRC Public Data Repository - Protein Structure Prediction

Protein:	synaptogyrin-PA
Organism:	Drosophila melanogaster
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for synaptogyrin-PA.

Description	E-value	Query Range	Subject Range
sng-1 - synaptogyrin status:Confirmed UniProt:O76735 protein_id:AAA81418.2	247.0	[0..10]	[239..1]
gi\|147904463, gi... - gi\|213624890\|gb\|AAI69355.1\| P7D11 protein [Xenopus laevis], gi\|213623146\|gb\|AAI69351.1\| P7D11 protei...	247.0	[0..25]	[237..15]
gi\|76645654 - gi\|76645654\|ref\|XP_591559.2\| PREDICTED: similar to synaptogyrin 2 [Bos taurus]	241.0	[0..14]	[231..135]
gi\|54636779, gi\|... - gi\|54636779\|gb\|EAL26182.1\| GA10572 [Drosophila pseudoobscura pseudoobscura], gi\|125810739\|ref\|XP_001... gi\|125810739\|ref... - GA10572-PA [Drosophila pseudoobscura], GA10572 [Drosophila pseudoobscura pseudoobscura] gi\|195154198, gi... - gi\|195154198\|ref\|XP_002018009.1\| GL16996 [Drosophila persimilis], gi\|194113805\|gb\|EDW35848.1\| GL1699...	239.0	[0..1]	[241..1]
SNG1_MOUSE - Synaptogyrin-1 OS=Mus musculus GN=Syngr1 PE=1 SV=2	234.0	[0..25]	[232..15]
SNG1_RAT - Synaptogyrin-1 OS=Rattus norvegicus GN=Syngr1 PE=2 SV=1	233.0	[0..25]	[232..15]
SYNGR1 - synaptogyrin 1 HGNC:11498\|MIM:6... - 1 gi\|109452116, gi... - gi\|109452116\|emb\|CAK54920.1\| SYNGR1 [synthetic construct], gi\|109451520\|emb\|CAK54621.1\| SYNGR1 [synt...	232.0	[0..25]	[240..15]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMLNQILSI NNGGAYGGGK AGGAFDPLTF AMKPQVVIRA LCWLFSVVVF GCISSEGWTE  60
   61 KDGKEYCLYN GDGMACKYGN MVGVFGFLAS MGFMGGEFLF ERMSSVKSRK RYVMADMGFS 120
  121 ALWTFMYFVA FLYLWSQWSS SAPPPLGIGA GSMKTAIWFC LFSIVSWALC ALMAYKRFLI 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.853872
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAGDEFTSAF ETDPANVVHQ QAYGYSMDND NDQYSASPFG QPQQGGMEQQ QSGMEYQQPT  60
   61 Y

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits