YRC Public Data Repository - Protein Structure Prediction

Protein:	Mp20-PA
Organism:	Drosophila melanogaster
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Mp20-PA.

Description	E-value	Query Range	Subject Range
CNN2 - calponin 2 CNN2_PONPY - Calponin-2 - Pongo pygmaeus (Orangutan) CNN2_PONAB - Calponin-2 OS=Pongo abelii GN=CNN2 PE=2 SV=3	214.0	[0..2]	[181..13]
gi\|114630314 - gi\|114630314\|ref\|XP_001156976.1\| PREDICTED: similar to neutral calponin isoform 2 [Pan troglodytes]	214.0	[0..2]	[181..13]
CNN2_MOUSE - Calponin-2 OS=Mus musculus GN=Cnn2 PE=1 SV=1	213.0	[0..2]	[181..13]
CNN2_BOVIN - Calponin-2 OS=Bos taurus GN=CNN2 PE=2 SV=3	211.0	[0..2]	[181..13]
gi\|60826805 - gi\|60826805\|gb\|AAX36772.1\| calponin 3 [synthetic construct]	211.0	[0..2]	[181..11]
gi\|66514697 - gi\|66514697\|ref\|XP_392501.2\| PREDICTED: similar to Muscle protein 20 CG4696-PA, isoform A [Apis mell...	211.0	[0..1]	[184..1]
gi\|109075217, gi... - gi\|109075217\|ref\|XP_001110816.1\| PREDICTED: similar to calponin 2 isoform a isoform 4 [Macaca mulatt...	211.0	[0..2]	[181..13]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLERAVRAK IASKRNPEMD KEAQEWIEAI IAEKFPAGQS YEDVLKDGQV LCKLINVLSP  60
   61 NAVPKVNSSG GQFKFMENIN NFQKALKEYG VPDIDVFQTV DLYEKKDIAN VTNTIFALGR 120
  121 ATYKHADFKG PFLGPKPADE CKRDFTEEQL KAGQTIVGLQ AGSNKGATQA GQNLGAGRKI 180
  181 LLGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1wynA
Description:	Solution structure of the CH domain of human calponin-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits