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View Structure Prediction Details

Protein: CG4670-PA, FBpp0...
Organism: Drosophila melanogaster
Length: 637 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4670-PA, FBpp0....

Description E-value Query
Range
Subject
Range
gi|195149427, gi... - gi|195149427|ref|XP_002015659.1| GL10907 [Drosophila persimilis], gi|194109506|gb|EDW31549.1| GL1090...
gi|125807057|ref... - GA18343-PA [Drosophila pseudoobscura], GA18343 [Drosophila pseudoobscura pseudoobscura]
gi|125807057, gi... - gi|54635422|gb|EAL24825.1| GA18343 [Drosophila pseudoobscura pseudoobscura], gi|125807057|ref|XP_001...
520.0 [0..1] [637..1]

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Predicted Domain #1
Region A:
Residues: [1-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATHLVILA VALLVDIASA GVPLPRYEAL LKQQSPPSDP TLGLYDDGDK VIRLSVDNFN  60
   61 ATVLDQNRGA LVEFYNTYCG HCRRFAPTYK SVAEHLLPWS EVLIVAAIDC AAEENNGICR 120
  121 NYEVMGYPTL RYLGPGFQPG PQHYGQSLHT QDKNEIREIL AGMVAAENLT SSHNNSYWPN 180
  181 FHYLTENDSA SSLFEGLSSA TEYVAVVHEP ENTTLGVEVA LFMTQWPAVR VRRVIDPAVA 240
  241 AKFKIDPTNL PLSLVDRKGE ITAYAPESTN GESYAKKLWD VLGKKNITPR PVKVHQPSAT 300
  301 PASKIKGQNE LIDEVHRNKH FVYQADLEQA IRTVLHNEVS KVGEISGEKL LALQRFLAVL 360
  361 QRYNPLGANG HQLVSKLKDY VVQFNDQRLT GSQFEEELKR LEAHLSPVYS SNHFVGCVGS 420
  421 SPRLRGFSCS LWTLFHFMTV QAANNEETQD PLEVLQAMHG YIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [464-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFFGCTECSE HFQAMASRRK IWSVPNKEEA VLWLWAAHNE VNQRLAGDAT EDPEFPKKQF  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 1oqcA
Description: Augmenter of liver regeneration
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [524-637]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAPESCNECY RTPVSKSENL EIEWNKDAVL GFLKNIHNPQ FVSRYGVQRE ELLHPTADKM  60
   61 RQKRQISSVF TDMDMRMGML LYAFCIVMMV LAFKLFAFKG YRKKPYGHDL LGKV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle