YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0301836, FBp...
Organism:	Drosophila melanogaster
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0301836, FBp....

Description	E-value	Query Range	Subject Range
gi\|21406630 - gi\|21406630\|gb\|AAL48460.2\| GH09946p [Drosophila melanogaster]	180.0	[0..1]	[212..16]
gi\|55621758 - gi\|55621758\|ref\|XP_516965.1\| PREDICTED: similar to Apolipoprotein D precursor (Apo-D) (ApoD) [Pan tr...	169.0	[0..7]	[210..1]
RET4_PIG - Retinol-binding protein 4 OS=Sus scrofa GN=RBP4 PE=1 SV=2	164.0	[0..12]	[208..3]
gi\|73998292 - gi\|73998292\|ref\|XP_534969.2\| PREDICTED: similar to retinol-binding protein 4, plasma precursor [Cani...	164.0	[0..12]	[208..69]
APOD_MOUSE - Apolipoprotein D OS=Mus musculus GN=Apod PE=1 SV=1	161.0	[0..9]	[212..4]
gi\|20141667, gi\|... - sp\|P02753\|RETB_HUMAN Plasma retinol-binding protein precursor (PRBP) (RBP) (PRO2222), gi\|18088326\|gb... gi\|123995765, gi... - gi\|123995765\|gb\|ABM85484.1\| retinol binding protein 4, plasma [synthetic construct], gi\|123980956\|gb...	160.0	[0..9]	[208..1]
gi\|54635490, gi\|... - gi\|54635490\|gb\|EAL24893.1\| GA18293-PA [Drosophila pseudoobscura], gi\|125807241\|ref\|XP_001360318.1\| G...	159.0	[0..13]	[212..2]

Back

Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSGQPLGSR VWLLSGVLLV TFAGTDAYGF GRCPNYPSMP KFNMSRVLGH WYEVERSFYL  60
   61 PEIASGCTTF QFEPYNKGEQ SKFSNFKLAV AIKNINRITG NPNVNIGYAT PENSRSSIMD 120
  121 FKFTTRFPDV IARLLPGSGK YQVLYTDYEN FAILWSCGSI GSLGHSDQIW ILGRDRDFEV 180
  181 DIRSKVYDVL KRLSLDPERL IISKNKQCPE AL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.09691
Match:	2hzqA
Description:	No description for 2hzqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits