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View Structure Prediction Details

Protein: Su(z)2-PB, Su(z)2-PA
Organism: Drosophila melanogaster
Length: 1368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Su(z)2-PB, Su(z)2-PA.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
400.0 [0..212] [1367..428]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLQNTHNTM ESNAAMDAAS PASRDVRQFH DLITCRLCRG YMIDPTTVDY CYHTYCRSCI  60
   61 LKHLLRAVYC PECKASGGKE INELNLKSDD TLRSLIYKLV PGLYQRECKE LADFKEQHDL 120
  121 VDEQTTDEPE FFTTTELISL SLEYHPAMLH QCGPGEVPPT IYLQCAAGLP VELLKRFLCS 180
  181 KYNIETDNGL VEVEVTYKDE VLPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 2cklA
Description: No description for 2cklA was found.

Predicted Domain #2
Region A:
Residues: [205-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFTLMDVAYC YNWSRESPMA FCYRILLYDN EQTKNDENNL SRINQD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [251-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEPEHSVRRS KSAKSVTFAE DLESEIDSGS PRSKVRCKTP PKVSPSSKNK RLTSSKREAE  60
   61 PESPVSNFKS LRSNDMRYSD YAVSKVKSEP EQEQFLLPRE REQQPLEANT NIVVSIPPSQ 120
  121 LRKSYVDAED FELKTANRKG VGHLPKLKIE LNSMKSKLSM PLSAGPRLED TSCSLSCSAQ 180
  181 QLDLETYAKN IGLKPIEQPL QQSASNPDSK YSPNASPMSS CSSSTNGSSS SLGTADASTS 240
  241 T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [492-672]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSSSHRKRK KKHSKEPKDA NGKRKKLHAE ISSQTDGKMK VKITAKPNHK LDFKRSHSLA  60
   61 SGELDLQKLK LDSTSTSEAL NRTLGEEARS INSLVVGGAP TPPPTPTAEP EQQQQQQQQQ 120
  121 QQPQQQQQQQ QQQQQQQQFV VLPKIKDLTL PTSPPLPPSL FKAYTPSTTP TAPHTVAGGK 180
  181 P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [673-893]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQQQQQMPQQ PQAVLQQSLA KTNPAKPPLS SNNNRKPNSG HFAVPQAPTH RNMYHMQRYQ  60
   61 STPSSIASAA NKMPKRSMSL DESHPAKQAR LSQAQAMASS YAAKLHMQTS NQAKSQAAAF 120
  121 LPNPQMRSYG LPDLGSKPTL PMLCPASSSS QVTITPRPRA TPSIYSFSEP NIHVPALEIV 180
  181 RLPVNKQSAG GKGLTMPPLS PPATSSARLM GPPAALPKHA G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [894-1011]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGHGAAKRSC QMPTMPMPLP LPLPMPMTTI PAIVKSPPLS VALSGQRNNK GNSSNSNAYR  60
   61 TSPPALINLR NTAAPQHSFP SKSSPKVEAN SKKSPPAAGC QGKTNGTAAL DKSKTSLR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1012-1210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFRPAVQSAV TATATTSVTT AAGAGAGAGT GTGTALAKDA DILDLSANPG RSNNDAKLAP  60
   61 NSPPAGNNNN NNNNNNNNNN NNNNNNNNST SNSLEAALNK IKQNISANSN GGPSTTSGSN 120
  121 SNGTTNGDDL QNLHMLSESA TAREKISIKA ASSGNGSGST SSSSAKPKNA NALVRPQNAS 180
  181 VRSIPNPSAL AFRNQPAAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1211-1368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STAASISKPL TVRAEEKPKV STSNPGSLSP TNTSSSSSSS SSGSSGCSAA TSPRAMTKKP  60
   61 TTIDQVAANL NIRAEAKAAA LAEEAPPVLS SNAAKSPELA KTTTAVALRP EPKETPITVS 120
  121 AASTLLTIPS AVSSVSAVPE TMAKPPVQIA NAPVASSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle