YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3814-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3814-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|73974854 - gi\|73974854\|ref\|XP_532348.2\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-aspara...	224.0	[0..9]	[236..263]
gi\|109087974, gi... - gi\|109087976\|ref\|XP_001098441.1\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-as...	219.0	[0..9]	[236..142]
gi\|60477740 - gi\|60477740\|gb\|AAH41788.2\| Glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1...	218.0	[0..9]	[236..142]
gi\|114622146 - gi\|114622146\|ref\|XP_520009.2\| PREDICTED: similar to Glutamate receptor, ionotropic, N-methyl D-aspar...	216.0	[0..9]	[236..142]
gi\|157128927, gi... - gi\|157128927\|ref\|XP_001661552.1\| nmda receptor glutamate-binding chain [Aedes aegypti], gi\|108872427...	211.0	[0..2]	[239..82]
gi\|147904118, gi... - gi\|27503256\|gb\|AAH42223.1\| Grina-prov protein [Xenopus laevis], gi\|147904118\|ref\|NP_001080331.1\| NMD...	211.0	[0..10]	[235..150]
LFG1_BOVIN - Protein lifeguard 1 OS=Bos taurus GN=GRINA PE=2 SV=1	208.0	[0..9]	[236..137]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDNHFQYD AEADKSFAFD DQSIRKGFIR KVYLILMCQL LITFGFVSVF TFSKASQEWV  60
   61 QKNPALFWIA LAVLIVTMIC MACCESVRRK TPLNFIFLFL FTVAESFLLG MVAGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEADEVLMAV GITAAVALGL TLFALQTKYD FTMCGGVLVA CLVVFIIFGI IAIFIPGKVI  60
   61 GLVYASLGAL LFSVYLVYDT QLMLGGNHKY SISPEEYIFA ALNLYLDIIN IFMYILTIIG 120
  121 LSRN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits