YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL18-PA
Organism:	Drosophila melanogaster
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL18-PA.

Description	E-value	Query Range	Subject Range
gi\|4733885 - gi\|4733885\|gb\|AAD28638.1\| unknown [Drosophila melanogaster]	196.0	[0..1]	[186..1]
gi\|38048461 - gi\|38048461\|gb\|AAR10133.1\| similar to Drosophila melanogaster CG12373 [Drosophila yakuba]	195.0	[0..1]	[186..1]
gi\|54636439, gi\|... - gi\|54636439\|gb\|EAL25842.1\| GA11589-PA [Drosophila pseudoobscura], gi\|125809854\|ref\|XP_001361264.1\| G...	176.0	[0..1]	[179..1]
RL18_HALSA - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpl... RL18_HALS3 - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18 PE=... RL18_HALSA - 50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3	161.0	[0..20]	[183..2]
RL18_HALMA - 50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3 RL18_HALMA - 50S ribosomal protein L18 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B...	157.0	[0..20]	[183..2]
RL18_HALMA - (P14123) 50S ribosomal protein L18P (Hmal18) (Hl12) gi\|88192388, gi\|... - gi\|88192388\|pdb\|2B9P\|S Chain S, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co... gi\|28373733 - gi\|28373733\|pdb\|1ML5\|QQ Chain q, Structure Of The E. Coli Ribosomal Termination Complex With Release... gi\|66361033\|pdb\|... - Chain Q, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina...	157.0	[0..20]	[183..1]
gi\|157818901, gi... - gi\|27729919\|ref\|XP_214751.1\| PREDICTED: similar to mitochondrial ribosomal protein L18 [Rattus norve...	157.0	[0..1]	[158..24]
gi\|7440747 - pir\|\|B69127 ribosomal protein L5 - Methanobacterium thermoautotrophicum (strain Delta H) RL18_METTH - 50S ribosomal protein L18 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / ...	155.0	[0..20]	[186..2]
RL18_CARHZ - 50S ribosomal protein L18 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2...	154.0	[0..31]	[152..2]
RL18_METJA - 50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1 RL18_METJA - 50S ribosomal protein L18 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / J...	153.0	[0..20]	[186..2]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSARPLTS ARVLHKIKEL TTPQASTEYV INRNPRNLER LRIAYKPVGY HLEKPGRSYW  60
   61 HTLEINTSGR YVSGDVKHFE NGTILSASTS EWAIKQQLYK TNDTSAFVNL GRVLAQRCLQ 120
  121 SGITEMTCNV EAVPGSKLQK LLQTIQDNGV SFKEPSRLPN EQPWDEKRHE KPWEVSEDAL 180
  181 EAPKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	1s72N
Description:	REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits