YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8776-PC
Organism:	Drosophila melanogaster
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8776-PC.

Description	E-value	Query Range	Subject Range
gi\|109492061 - gi\|109492061\|ref\|XP_001081563.1\| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Rattus no...	230.0	[0..3]	[201..312]
gi\|114669809 - gi\|114669809\|ref\|XP_511596.2\| PREDICTED: similar to Cytochrome b-561 [Pan troglodytes]	204.0	[0..3]	[201..47]
CG8776-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8776 (CG8776, FBgn0033764). It is a protein... gi\|220950450, gi... - gi\|220959386\|gb\|ACL92236.1\| CG8776-PA [synthetic construct], gi\|220950450\|gb\|ACL87768.1\| CG8776-PA [...	201.0	[0..1]	[210..81]
gi\|109105937 - gi\|109105937\|ref\|XP_001082706.1\| PREDICTED: similar to cytochrome b, ascorbate dependent 3 [Macaca m...	199.0	[0..2]	[209..113]
CY561_MOUSE - Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=1 SV=2	199.0	[0..3]	[201..37]
gi\|27597088, gi\|... - ref\|NP_001906.2\| cytochrome b-561 [Homo sapiens], gi\|12804235\|gb\|AAH02976.1\| Cytochrome b-561 [Homo...	198.0	[0..3]	[201..38]
CY561_PONPY - Cytochrome b561 - Pongo pygmaeus (Orangutan) CY561_PONAB - Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=1	198.0	[0..3]	[201..38]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYRDGFAWS ESPKQQFNLH PILMIAGFVT LSGFSILIYR LCRCVKQIYV KLIHMFFHAV  60
   61 AIPCIALGFI SVFASHDALH KVNFYSLHSW LGFVTMGMFV LQFVIGFFSF LVMLCCENKT 120
  121 YSCRSAMVPI HASLGLANFW LAIATSVTGL IEKERETVNE AGVSSENKLV EHYITSAIGV 180
  181 TLIFIGIIVT FAVRRSNAPA SAKVYVTERI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.349353660965659	bayes_pls_golite062009
binding	0.0102629993652836	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: