YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr49Ad-PA
Organism:	Drosophila melanogaster
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr49Ad-PA.

Description	E-value	Query Range	Subject Range
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	138.0	[0..66]	[155..78]
gi\|119114027, gi... - gi\|119114027\|ref\|XP_318997.3\| ENSANGP00000014755 [Anopheles gambiae str. PEST], gi\|116118219\|gb\|EAA1...	132.0	[0..63]	[156..121]
gi\|21627378, gi\|... - gi\|24653001\|ref\|NP_725147.1\| CG30045-PA [Drosophila melanogaster], gi\|21627378\|gb\|AAM68675.1\| CG3004...	132.0	[0..56]	[164..170]
gi\|125808742, gi... - gi\|54636027\|gb\|EAL25430.1\| GA21357-PA [Drosophila pseudoobscura], gi\|125808742\|ref\|XP_001360855.1\| G...	130.0	[0..6]	[166..5]
CU22_BOMMO - Larval cuticle protein LCP-22 OS=Bombyx mori GN=LCP22 PE=2 SV=1	129.0	[0..6]	[162..3]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKLFSCLF VLTLAAIACE GQPQYNPYLR NPYYRDLYYR NRDLYNLRRF YDGFYKKYNP  60
   61 YIAAAQARIV EQNNDVNYGA GSYSYNYETE NGIHGEERGV PVNIGNQQQE EQVEGAYSFI 120
  121 TPEGLRVGVK YLADANGFRP VITYDGVNSA FYAGQPAPAN VVYTKH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.113509
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits