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View Structure Prediction Details

Protein: Cpr49Ab-PA
Organism: Drosophila melanogaster
Length: 259 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr49Ab-PA.

Description E-value Query
Range
Subject
Range
gi|125808731, gi... - gi|54636024|gb|EAL25427.1| GA15599 [Drosophila pseudoobscura pseudoobscura], gi|125808731|ref|XP_001...
gi|125808731|ref... - GA15599-PA [Drosophila pseudoobscura], GA15599 [Drosophila pseudoobscura pseudoobscura]
175.0 [0..1] [259..1]

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Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLRVAIVLV IALAAAVLAQ NDGRYRPPPT RASAGDGRYR GGNDGRYRGG GDGRYSGGND  60
   61 GRYVHMDNKY KHDDRPGGDY SGDAGRYVGD KNRGGGGGGG GGGGGGGGSG AGGGGAAVVV 120
  121 PRTSARPQPR PTTAAPPAIA DPTANLPKGR GTGEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.30103
Match: 1deqA
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [156-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNGWAIIRQE DDVEVDGYHY LWETENGILG EESGRIEKLT EEEGLRSKGF YEYTGPDGIL  60
   61 YRVDYVADDN GFVPSAAHLP TAPPPPPYVE KLLAFLEANA KTKK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.21467
Match: PF00379.14
Description: No description for PF00379.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle