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View Structure Prediction Details

Protein: Tango3-PA
Organism: Drosophila melanogaster
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tango3-PA.

Description E-value Query
Range
Subject
Range
gi|56800448 - gi|56800448|emb|CAI35291.1| glutamate receptor, ionotropic, AMPA1 (alpha 1) [Mus musculus]
285.0 [0..3] [386..192]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYPLRVLVT NDPPHCFVDK DELPGSPNRY KGSIVTMLKI FADQLNATFQ ANPFREFRRY  60
   61 STADCVQMVS DDEIDACGSI FIRTYTYATS QPVRLNRVVI MAPFGNPIEK FYYFFRPFDL 120
  121 YVWIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 1mqhA
Description: Crystal Structure of the GluR2 Ligand Binding Core (S1S2J) in Complex with Bromo-Willardiine at 1.8 Angstroms Resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [126-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGIIVVYIAV MGSLLHRWHF KEWNVGQYLL LAVQTLLNRE LSLPQSSSGS KFMLLLLLFA  60
   61 IGFILSNLYV ALLSMMLTTK L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [207-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQRPIENLAD LKAANVNILL QTHNIRPNSV YGSSEELRER FLLVEESQHL EKRNGLDPSY  60
   61 AYVDSEDRMD FYLYQQKFLR RRRMKKLSNP VGYTWAVQVI KQNWVLEKHY NDHVQRFFET 120
  121 GLQNKLVDDV HELAVKAGFL HFFPTQTQTI EPLRLEDIVM AAMVLGGGHA LAVICFLVEL 180
  181 FA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 2ia4A
Description: No description for 2ia4A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle