YRC Public Data Repository - Protein Structure Prediction

Protein:	ix-PA
Organism:	Drosophila melanogaster
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ix-PA.

Description	E-value	Query Range	Subject Range
gi\|73948362 - gi\|73948362\|ref\|XP_855358.1\| PREDICTED: similar to intersex-like [Canis familiaris]	244.0	[0..32]	[185..77]
gi\|52352487, gi\|... - gi\|52840095\|ref\|NP_060062.1\| mediator complex subunit 29 [Homo sapiens], gi\|52352487\|gb\|AAU43732.1\| ...	239.0	[0..35]	[185..60]
gi\|109124678 - gi\|109124678\|ref\|XP_001086553.1\| PREDICTED: similar to intersex-like [Macaca mulatta]	237.0	[0..35]	[185..60]
MED29_MOUSE - Mediator of RNA polymerase II transcription subunit 29 OS=Mus musculus GN=Med29 PE=2 SV=1	232.0	[0..10]	[185..1]
gi\|54636669, gi\|... - gi\|54636669\|gb\|EAL26072.1\| GA12116 [Drosophila pseudoobscura pseudoobscura], gi\|125810444\|ref\|XP_001... gi\|54636669\|gb\|E... - GA12116-PA [Drosophila pseudoobscura], GA12116 [Drosophila pseudoobscura pseudoobscura]	229.0	[0..11]	[188..11]
gi\|76641527 - gi\|76641527\|ref\|XP_871568.1\| PREDICTED: similar to intersex-like isoform 1 [Bos taurus]	212.0	[0..10]	[185..1]
MED29_DANRE - Mediator of RNA polymerase II transcription subunit 29 OS=Danio rerio GN=med29 PE=2 SV=1	212.0	[0..16]	[185..1]
gi\|47207497 - gi\|47207497\|emb\|CAF90844.1\| unnamed protein product [Tetraodon nigroviridis]	211.0	[0..26]	[185..10]
MED29_XENLA - Mediator of RNA polymerase II transcription subunit 29 OS=Xenopus laevis GN=med29 PE=2 SV=1	203.0	[0..10]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPNMNMMPM SGPQMMQVMQ SSPSGPPGPV QHQQQQPPQP LQQQQQAEKL DNISRVKSLL  60
   61 GPLRESMFLT IRSSAFALQQ NNLADNLKRD TGAHHVPRFD KHLEDFYACC DQIEIHLKTA 120
  121 MQCLQQQNSS NHYLPGPVTP MRMETFMPDN AGPISYPTYL NTVRVHIQSA KDIHDTLISA 180
  181 AQNISQAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits