YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr47Ea-PA
Organism:	Drosophila melanogaster
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr47Ea-PA.

Description	E-value	Query Range	Subject Range
gi\|119114027, gi... - gi\|119114027\|ref\|XP_318997.3\| ENSANGP00000014755 [Anopheles gambiae str. PEST], gi\|116118219\|gb\|EAA1...	146.0	[0..37]	[131..121]
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	144.0	[0..40]	[130..78]
gi\|125809816, gi... - gi\|54636420\|gb\|EAL25823.1\| GA21525-PA [Drosophila pseudoobscura], gi\|125809816\|ref\|XP_001361245.1\| G...	143.0	[0..3]	[135..3]
gi\|108881215, gi... - gi\|157135292\|ref\|XP_001656586.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881215\|g...	135.0	[0..8]	[131..1]
gi\|45445693, gi\|... - gi\|45552587\|ref\|NP_995817.1\| cuticular protein 47Ef, isoform B [Drosophila melanogaster], gi\|4544569...	134.0	[0..28]	[130..119]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTHASAAA LVLALCCLSF IQAQPQRGLP PPRGNSFDAN AVILKQNFDL NPDGSYQYNY  60
   61 ETSNGIRADE AGYLKNPGSQ IEAQVMQGSY SYTGPDGVVY TITYIADENG YRAEGAHIPT 120
  121 PPPVRAAAAP GRFFK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.337242
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits