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View Structure Prediction Details

Protein: CG12309-PA
Organism: Drosophila melanogaster
Length: 527 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12309-PA.

Description E-value Query
Range
Subject
Range
gi|125811089, gi... - gi|54636920|gb|EAL26323.1| GA11547-PA [Drosophila pseudoobscura], gi|125811089|ref|XP_001361744.1| G...
444.0 [0..1] [521..1]

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Predicted Domain #1
Region A:
Residues: [1-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDTALGTVL SVMVQLIILV FGQILGQVVQ HPLITTGLCL LGAFAYHADQ ETLKEIYQRV  60
   61 LLLIRTPLQF GNTSCSRNSA PVYGYDMQHG PHTWLPKSRS SSSSVEEATF FQSPVNIDES 120
  121 QIQRMAIREL LSWNHYDDLP ASITLENTGQ TLILRAQFHG NAPTISGADL LASYTFLELR 180
  181 FHWGWCNSEG SEHTINHRKF PLEMQVMHKT GSGIPRTCTS SYDLLMIGYV FELSAHNPFL 240
  241 DPLVQNLRLV QKPGKRVQIS PFPISYLMYQ FRSGFYSYGG SLTHPPCYQG TEWFIFPESL 300
  301 AISDFQLRHF RLLLGPDGIS PIARNSRPVQ HMGNRVVSLN CFCPY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.39794
Match: 2fnkA
Description: No description for 2fnkA was found.

Predicted Domain #2
Region A:
Residues: [346-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAAQLSRMHV ELCQAQAQEE HEEERIEQEQ QLELERELER QRESDLKAQQ EQASEAAIAA  60
   61 SEDEGQLIET IDTTTIITS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [425-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNTSICMTT LMRKDSPRQL EQPSQMPMMA PNQGNFCNPG IVIFSGVNES KSKCGIHQDT  60
   61 PEELMIHNRG TGRNMGVQNG CKADAFCGVG DGVNIGIRME LVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle