YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0293004, mRp...
Organism:	Drosophila melanogaster
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0293004, mRp....

Description	E-value	Query Range	Subject Range
gi\|125808308, gi... - gi\|54635878\|gb\|EAL25281.1\| GA11910-PA [Drosophila pseudoobscura], gi\|125808308\|ref\|XP_001360706.1\| G...	166.0	[0..3]	[124..1]
gi\|114646238 - gi\|114646238\|ref\|XP_001139490.1\| PREDICTED: mitochondrial ribosomal protein L42 isoform 4 [Pan trogl...	160.0	[0..31]	[121..48]
gi\|55238669, gi\|... - gi\|58387878\|ref\|XP_315880.2\| ENSANGP00000017500 [Anopheles gambiae str. PEST], gi\|55238669\|gb\|EAA115...	158.0	[0..26]	[124..123]
gi\|119617893, gi... - gi\|26667174\|ref\|NP_751918.1\| mitochondrial ribosomal protein L42 isoform b [Homo sapiens], gi\|119617...	158.0	[0..31]	[121..48]
RM42_PONAB - 39S ribosomal protein L42, mitochondrial OS=Pongo abelii GN=MRPL42 PE=2 SV=1 RT32_PONPY - Mitochondrial 28S ribosomal protein S32, mitochondrial precursor - Pongo pygmaeus (Orangutan)	158.0	[0..31]	[121..48]
RM42_MOUSE - 39S ribosomal protein L42, mitochondrial OS=Mus musculus GN=Mrpl42 PE=1 SV=1	156.0	[0..32]	[121..48]
gi\|114145778, gi... - gi\|62654017\|ref\|XP_345957.2\| PREDICTED: similar to LRRGT00187 [Rattus norvegicus], gi\|45478214\|gb\|AA...	154.0	[0..31]	[116..21]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAARLYGGF RLFSSSAVQR NAVGGKSLVE AVAVTKNGRT IVAWHPDTPV PYENTLPLPE  60
   61 ISEIQSSAVV KESALKTAMR AFKSKHPEVA RQELMQLTHT TKHRWFPRAR DRKAKQTPMD 120
  121 RPYL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits