YRC Public Data Repository - Protein Structure Prediction

Protein:	CG1418-PA
Organism:	Drosophila melanogaster
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1418-PA.

Description	E-value	Query Range	Subject Range
gi\|190660988, gi... - gi\|27374247\|gb\|AAO01006.1\| CG1418-PA [Drosophila erecta], gi\|194858185\|ref\|XP_001969121.1\| GG25243 [...	210.0	[0..1]	[193..1]
gi\|195155079, gi... - gi\|195155079\|ref\|XP_002018434.1\| GL17704 [Drosophila persimilis], gi\|194114230\|gb\|EDW36273.1\| GL1770... gi\|54636405\|gb\|E... - GA12807-PA [Drosophila pseudoobscura], GA12807 [Drosophila pseudoobscura pseudoobscura] gi\|54636405, gi\|... - gi\|54636405\|gb\|EAL25808.1\| GA12807 [Drosophila pseudoobscura pseudoobscura], gi\|125809764\|ref\|XP_001...	195.0	[0..1]	[193..1]
gi\|33150702 - gi\|33150702\|gb\|AAP97229.1\|AF112996_1 prenylated RAB acceptor 1 [Homo sapiens]	190.0	[0..29]	[186..21]
gi\|60834043 - gi\|60834043\|gb\|AAX37076.1\| Rab acceptor 1 [synthetic construct]	189.0	[0..29]	[186..22]
gi\|109124936 - gi\|109124936\|ref\|XP_001104030.1\| PREDICTED: Rab acceptor 1 (prenylated) isoform 2 [Macaca mulatta]	188.0	[0..29]	[186..22]
PRAF1_RAT - Prenylated Rab acceptor protein 1 OS=Rattus norvegicus GN=Rabac1 PE=1 SV=1	188.0	[0..29]	[186..22]
PRAF1_MOUSE - Prenylated Rab acceptor protein 1 OS=Mus musculus GN=Rabac1 PE=1 SV=1	188.0	[0..29]	[186..22]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHTGGNLSG NMQPPPPSGG RFSVDMQSLP SLSNLPSPLQ IFQMVRNSLR PWVVFFNINN  60
   61 FKTAISMQRL NSRVIRNLSY FQANYVFIFF VLMIYCLITA PCILLVILAS AFGCHKLRVR 120
  121 NSNITIVGQQ LTPSQQIIAL NLATAPVLFL VGAGAVLFWT LGASCFVIAM HAIFYNIDAI 180
  181 VTEENEGFLA QVV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.619789
Match:	PF03208.10
Description:	No description for PF03208.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits