YRC Public Data Repository - Protein Structure Prediction

Protein:	cbx-PB
Organism:	Drosophila melanogaster
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cbx-PB.

Description	E-value	Query Range	Subject Range
AKTP1_DROPS - Protein crossbronx OS=Drosophila pseudoobscura pseudoobscura GN=cbx PE=3 SV=1 gi\|125811313, gi... - gi\|54637008\|gb\|EAL26411.1\| GA10380 [Drosophila pseudoobscura pseudoobscura], gi\|125811313\|ref\|XP_001... AKTP1_DROPE - Protein crossbronx OS=Drosophila persimilis GN=cbx PE=3 SV=1	191.0	[0..1]	[244..1]
cbx-PA - The gene crossbronx is referred to in FlyBase by the symbol Dmel\cbx (CG10536, FBgn0011241). It is a... gi\|220959290, gi... - gi\|220959290\|gb\|ACL92188.1\| cbx-PA [synthetic construct], gi\|220950316\|gb\|ACL87701.1\| cbx-PA [synthe...	188.0	[0..32]	[244..2]
gi\|118781434, gi... - gi\|118781434\|ref\|XP_311466.3\| AGAP010478-PA [Anopheles gambiae str. PEST], gi\|116129947\|gb\|EAA07209.... AKTIP_ANOGA - Protein crossbronx homolog OS=Anopheles gambiae GN=AGAP010478 PE=3 SV=3	184.0	[0..3]	[243..1]
gi\|83754945 - gi\|83754945\|pdb\|2ESK\|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type	179.0	[0..21]	[176..4]
AKTIP_DANRE - AKT-interacting protein OS=Danio rerio GN=aktip PE=2 SV=1	179.0	[0..22]	[244..77]
gi\|62738886 - gi\|62738886\|pdb\|1Z2U\|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme...	179.0	[0..18]	[176..2]
gi\|18417097, gi\|... - gi\|66354424\|gb\|AAY44849.1\| ubiquitinating enzyme [Arabidopsis thaliana], gi\|18417097\|ref\|NP_567791.1...	178.0	[0..21]	[176..32]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDLDAHKK DDKLLITTIQ QEYKILAEYK MIESEKLSGI YVIPSYANSL QWFGVFFGRQ  60
   61 GLYAESVFRF TILLPDRFPD DKSLPSIIFQ QDVIHPHVCP YTHSLDVSHA FPEWRCGEDH 120
  121 LWQLLKYLQV IFSDPLDSIR GIEVDKLKNS EAAELLMNNK EEYVARVQEN IKESKEHIFD 180
  181 TPPTEDPHYI VFEKFQQDVH GPVLERIKAG RSKLTEPSAQ QANGGHATGL SWVKEGEFKP 240
  241 LSIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	2pwqA
Description:	No description for 2pwqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits