YRC Public Data Repository - Protein Structure Prediction

Protein:	dap-PA
Organism:	Drosophila melanogaster
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dap-PA.

Description	E-value	Query Range	Subject Range
gi\|1684911 - gi\|1684911\|gb\|AAB36557.1\| cyclin-dependent kinase inhibitor Dacapo [Drosophila melanogaster]	453.0	[0..1]	[245..1]
gi\|54636759, gi\|... - gi\|54636759\|gb\|EAL26162.1\| GA14624 [Drosophila pseudoobscura pseudoobscura], gi\|125810699\|ref\|XP_001... gi\|54636759\|gb\|E... - GA14624-PA [Drosophila pseudoobscura], GA14624 [Drosophila pseudoobscura pseudoobscura]	372.0	[0..1]	[245..1]
gi\|17016304 - gi\|17016304\|gb\|AAL31703.1\| dacapo [Drosophila virilis]	357.0	[0..1]	[245..1]
gi\|157110440, gi... - gi\|157110440\|ref\|XP_001651102.1\| hypothetical protein AaeL_AAEL005580 [Aedes aegypti], gi\|108878706\|...	109.0	[0..2]	[211..1]
gi\|110751241 - gi\|110751241\|ref\|XP_001121044.1\| PREDICTED: similar to dacapo CG1772-PA, isoform A [Apis mellifera]	71.0	[0..2]	[215..1]
gi\|1584843, gi\|2... - gi\|213624930\|gb\|AAI69443.1\| Xicl gene [Xenopus laevis], gi\|213623214\|gb\|AAI69441.1\| Xicl gene [Xenop...	56.0	[0..39]	[211..33]
gi\|47229638 - gi\|47229638\|emb\|CAG06834.1\| unnamed protein product [Tetraodon nigroviridis]	52.0	[0..38]	[203..40]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSARVLNPV MISEFCKMSS SPAVSRNLAC GRQLNRIKRD LFGSSKSAEG TANKTPFNSE  60
   61 LERHQELATQ KWGFDFRAGC PLAEKSPYIW ERVSFQESSF APEMYTLTRA AHVRPSADAS 120
  121 PSDMDILVNE RSERENFGSN LVNSS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.02
Match:	1jsuC
Description:	P27(KIP1) fragment 22-106
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [146-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LESNTDNESC YDSQDESLAM RLSSSSTTST SSIVLRKRQP KITEFMKERK RLAQAPKKLS  60
   61 PAKRMRTSSP SSSATSSSSS SGGFGLGAHF GAMLKRPRHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits