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View Structure Prediction Details

Protein: CG12926-PA
Organism: Drosophila melanogaster
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12926-PA.

Description E-value Query
Range
Subject
Range
gi|18447461 - gi|18447461|gb|AAL68293.1| RE39480p [Drosophila melanogaster]
286.0 [0..1] [313..1]

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Predicted Domain #1
Region A:
Residues: [1-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAYSNSIR SLSPELAKKA HDELGEIPDR IDEDIETLRT WISKQPHLKA RQDAQFLVAF  60
   61 LRGCKYSLEK TKLKLDNFYA MRGAVPELYK NRIVGEKQLS ILDTGCLLRL PQPLQADGPR 120
  121 IHISRYGQYD SKKYSIAEVV QVNTMLGEIQ IREDDNAMIS GFVEIIDMKG VGAGHLFQFD 180
  181 AVLVKKLAVL GDKAYPYRPK GFHFVNAPSS AEKFMSIAKS LMSEKIRKRF HIHSKLDSLY 240
  241 KYVPKECLPA EYGGSNGTIQ DVVSTWRTKL LAYKPFFEEE ASYGTNEKLR RGQPVSAESL 300
  301 FGIEGSFRKL DID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.39794
Match: 1oipA
Description: The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
vitamin E binding 3.58949389323234 bayes_pls_golite062009
binding 1.48494259967762 bayes_pls_golite062009
vitamin binding 1.00539404172882 bayes_pls_golite062009
phosphatidylinositol transporter activity 0.754580529725379 bayes_pls_golite062009
retinal binding 0.646905718502968 bayes_pls_golite062009
phospholipid transporter activity 0.48474525678945 bayes_pls_golite062009
protein binding 0.408110742195811 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle